B5EDV6 (B5EDV6_GEOBB) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
TPR domain protein EMBL ACH40734.1

Gene names

Ordered Locus Names:

Gbem_3742

Organism

Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) [Complete proteome] [HAMAP]

Taxonomic identifier

404380 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Deltaproteobacteria › Desulfuromonadales › Geobacteraceae › Geobacter

Protein attributes

Sequence length	589 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Technical term	Complete proteome
Gene Ontology (GO)
Cellular component	nucleus Inferred from electronic annotation. Source: InterPro
Molecular function	binding Inferred from electronic annotation. Source: InterPro sequence-specific DNA binding transcription factor activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	B5EDV6 [UniParc]. Last modified October 14, 2008. Version 1. Checksum: D57D82D770D8FFA3	FASTA	589	65,545
	10 20 30 40 50 60 MGYQESAENQ ARLKYVELLL KKGMQEEART QLQQLVQEDP GCARGWYLLA VLVGEQGFPD 70 80 90 100 110 120 QAAKLLRQAL RAEPENVKAL NALGVALQQM GERDQGAACY GEALRIDSRF QEARVNLALL 130 140 150 160 170 180 LKEGMRLAEA EALLSQGIAL EPESVRLRYN YANVLHYQGR SLEATGAYRE VLRLDPQHLD 190 200 210 220 230 240 ARQNLLFTLH YSPQFSDRQI FAEHLRAARS APLRLPSSPS VPRRGRRIRI GYLSPDFRSH 250 260 270 280 290 300 AVASFIEPVL KKHDRERFEI FCYANLPRPD RVTERIKGLC EHWRDLYNIP DQIAALMIAA 310 320 330 340 350 360 DALDVLIDLA GHTSGNRLPL FARKPAPLQI TWIGYPDTTG LKQMDYRITD RHADPPGKSE 370 380 390 400 410 420 RYHTEALLRL PRSFSCFLPP ADAPEVAPPP CLATGAVTFG SFNNLAKVTP EVIALWCRVL 430 440 450 460 470 480 HAVPGSRLLL KGRPFEDSGV RERIASQFST GGIGGERIEL NPGEPESSAH LAQYGRVDIA 490 500 510 520 530 540 LDTFPYNGTT TTCEALWMGV PVVTLAGTRH AARTGASILA NCGLDELVAE NEEEYLEIAR 550 560 570 580 RMAADRERLL ELRMGARERL SASPLLDAAG VTRELEAALE GILKERGVR

References

[1]

"Complete sequence of Geobacter bemidjiensis BEM." Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Kiss H., Brettin T., Detter J.C., Han C., Kuske C.R., Schmutz J., Larimer F., Land M., Hauser L. , Kyrpides N., Lykidis A., Lovley D., Richardson P. Submitted (JUL-2008) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: Bem / ATCC BAA-1014 / DSM 16622.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001124 Genomic DNA. Translation: ACH40734.1.
RefSeq	YP_002140530.1. NC_011146.1.
3D structure databases
ProteinModelPortal	B5EDV6.
ModBase	Search...
Protein-protein interaction databases
STRING	B5EDV6.
Protein family/group databases
CAZy	GT41. Glycosyltransferase Family 41.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	6780606.
GenomeReviews	Gene locus Gbem_3742 in contig CP001124_GR.
KEGG	gbm:Gbem_3742.
PATRIC	21991102. VBIGeoBem56306_3652.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HBG684498.
OMA	TVLNALW.
ProtClustDB	CLSK924623.
Family and domain databases
InterPro	IPR013026. TPR-contain. IPR011990. TPR-like_helical. IPR019734. TPR_repeat. IPR003309. Tscrpt_reg_SCAN. [Graphical view]
Gene3D	G3DSA:1.25.40.10. TPR-like_helical. 1 hit.
SMART	SM00028. TPR. 4 hits. [Graphical view]
PROSITE	PS50804. SCAN_BOX. 1 hit. PS50005. TPR. 4 hits. PS50293. TPR_REGION. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

B5EDV6_GEOBB

Accession

Primary (citable) accession number: B5EDV6

Entry history

Integrated into UniProtKB/TrEMBL:	October 14, 2008
Last sequence update:	October 14, 2008
Last modified:	December 14, 2011
This is version 21 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)