B5EBN2 (B5EBN2_GEOBB) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Lytic transglycosylase, SLT, LysM and LysM domain-containing protein EMBL ACH37501.1

Gene names

Ordered Locus Names:

Gbem_0472

Organism

Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) [Complete proteome] [HAMAP]

Taxonomic identifier

404380 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Deltaproteobacteria › Desulfuromonadales › Geobacteraceae › Geobacter

Protein attributes

Sequence length	484 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	cell wall macromolecule catabolic process Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	B5EBN2 [UniParc]. Last modified October 14, 2008. Version 1. Checksum: 844356302665D262	FASTA	484	53,747
	10 20 30 40 50 60 MIKTTLIILS LLFSTTAFAA PASTAAEQRD LARAMQVASN SSDVALSKGL GLTPSDFSDD 70 80 90 100 110 120 EDFSDDSQDY DLKLPEMELP DSDIPLTFNT KVDYFVRYFQ GPARPVFAKW LSRSERYIPM 130 140 150 160 170 180 MKTVLKKEGL PEDLVYLAMI ESGFMTHAVS VASAVGPWQF MPATGKRYAL RIDPWVDERR 190 200 210 220 230 240 DPLKATIAAA LYLKELYALF NNDWYLAAAG YNAGENKILR AINMYNTRDF WEISKGSYLA 250 260 270 280 290 300 RETKDYVPKL LAAAIIAKEP AKHGFADVAY LPPIEFDVVK IPSRTDLEVV AKACGVSVQT 310 320 330 340 350 360 IRDLNPALRR GSTPPDYPGY QLKVPRGAAA SFETEYAKVP ESERYTEKVK HVRYRAKKKD 370 380 390 400 410 420 TLVSIARRFK TTPQAIAELN DLGHKKAAKL HGKVLTVPVL VAAQGEQTST PALAEAKAEA 430 440 450 460 470 480 KEFHKYYTVK KGDTLASLAK RFNVTARVLS AWNNLKTRVA LKPGKRIIVA KYQEKKGAGA RDSG

References

[1]

"Complete sequence of Geobacter bemidjiensis BEM." Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Kiss H., Brettin T., Detter J.C., Han C., Kuske C.R., Schmutz J., Larimer F., Land M., Hauser L. , Kyrpides N., Lykidis A., Lovley D., Richardson P. Submitted (JUL-2008) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: Bem / ATCC BAA-1014 / DSM 16622.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001124 Genomic DNA. Translation: ACH37501.1.
RefSeq	YP_002137297.1. NC_011146.1.
3D structure databases
ProteinModelPortal	B5EBN2.
ModBase	Search...
Protein-protein interaction databases
STRING	B5EBN2.
Protein family/group databases
CAZy	CBM50. Carbohydrate-Binding Module Family 50. GH23. Glycoside Hydrolase Family 23.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	6783299.
GenomeReviews	Gene locus Gbem_0472 in contig CP001124_GR.
KEGG	gbm:Gbem_0472.
PATRIC	21984599. VBIGeoBem56306_0463.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HBG359010.
OMA	KQNWWYD.
ProtClustDB	CLSK828136.
Family and domain databases
InterPro	IPR023346. Lysozyme-like_dom. IPR008258. Lytic_TGlycosylase-like_cat. IPR018392. Peptidoglycan-bd_lysin. IPR002482. Peptidoglycan-bd_Lysin_subgr. [Graphical view]
KO	K08307.
Pfam	PF01476. LysM. 2 hits. PF01464. SLT. 1 hit. [Graphical view]
SMART	SM00257. LysM. 2 hits. [Graphical view]
SUPFAM	SSF53955. SSF53955. 1 hit.
ProtoNet	Search...

Entry information

Entry name

B5EBN2_GEOBB

Accession

Primary (citable) accession number: B5EBN2

Entry history

Integrated into UniProtKB/TrEMBL:	October 14, 2008
Last sequence update:	October 14, 2008
Last modified:	December 14, 2011
This is version 22 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)