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B5E857 (B5E857_GEOBB) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 32. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Riboflavin biosynthesis protein RibD PIRNR PIRNR006769
Gene names
Name:ribD EMBL ACH40026.1
Ordered Locus Names:Gbem_3024 EMBL ACH40026.1
OrganismGeobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) [Complete proteome] [HAMAP] EMBL ACH40026.1
Taxonomic identifier404380 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Deltaproteobacteria › Desulfuromonadales › Geobacteraceae › Geobacter ›

Protein attributes

Sequence length369 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'-phosphate By similarity. PIRNR PIRNR006769

Cofactor

Binds 1 zinc ion By similarity. PIRNR PIRNR006769

Pathway

Cofactor biosynthesis; riboflavin biosynthesis; 5-amino-6-(D-ribitylamino)uracil from GTP. PIRNR PIRNR006769

Sequence similarities

In the C-terminal section; belongs to the HTP reductase family. PIRNR PIRNR006769

In the N-terminal section; belongs to the cytidine and deoxycytidylate deaminase family. PIRNR PIRNR006769

Sequences

Sequence LengthMass (Da)Tools
B5E857 [UniParc].

Last modified October 14, 2008. Version 1.
Checksum: EF8942BC6E43C95D

FASTA36938,932
        10         20         30         40         50         60 
MADLHLKMMR LALAEARKGI GKTAPNPAVG CVIVRNGEVV GTGWHKKAGT PHAEVHALKA 

        70         80         90        100        110        120 
AGDKAAGADA YVTLEPCSHF GKTPPCAKAL IEARVARVFV AMVDPNPLVS GRGIQMLKDA 

       130        140        150        160        170        180 
GIAVEVGLLK EESRELNLPF IKWIQTKLPY VVLKSALTLD GKSATASGDS KWVTSDRARR 

       190        200        210        220        230        240 
EVHRLRGRLD AIMVGVGTVV KDDPLLTCRV PGGKDPLRVI VDSTLRIPLH AAILGVKSKA 

       250        260        270        280        290        300 
ETVIATCSCD HAKMEALKAH GVEILTCCES DGRVDLADLF EKLGARGVQS VLLEGGSHLA 

       310        320        330        340        350        360 
GAALRAGLID KCMIFLAPKL VGGAGMGLFA GEGATLMADA IRLEQVRVKR VGVDLLVEGV 


PVKTKSQNP

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References

[1]"Complete sequence of Geobacter bemidjiensis BEM."
US DOE Joint Genome Institute
Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Kiss H., Brettin T., Detter J.C., Han C., Kuske C.R., Schmutz J., Larimer F., Land M., Hauser L. expand/collapse author list , Kyrpides N., Lykidis A., Lovley D., Richardson P.
Submitted (JUL-2008) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Bem / ATCC BAA-1014 / DSM 16622.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP001124 Genomic DNA. Translation: ACH40026.1.
RefSeqYP_002139822.1. NC_011146.1.

3D structure databases

ProteinModelPortalB5E857.
ModBaseSearch...

Protein-protein interaction databases

STRING404380.Gbem_3024.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACH40026; ACH40026; Gbem_3024.
GeneID6779880.
KEGGgbm:Gbem_3024.
PATRIC21989694. VBIGeoBem56306_2959.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0117.
HOGENOMHOG000257443.
KOK11752.
OMALHVEAGF.
ProtClustDBCLSK828486.

Enzyme and pathway databases

BioCycGBEM404380:GHFR-3084-MONOMER.

Family and domain databases

Gene3D3.40.430.10. 1 hit.
InterProIPR016192. APOBEC/CMP_deaminase_Zn-bd.
IPR002125. CMP_dCMP_Zn-bd.
IPR016193. Cytidine_deaminase-like.
IPR024072. DHFR-like_dom.
IPR004794. Eubact_RibD.
IPR011549. RibD_C.
IPR002734. RibDG_C.
[Graphical view]
PfamPF00383. dCMP_cyt_deam_1. 1 hit.
PF01872. RibD_C. 1 hit.
[Graphical view]
PIRSFPIRSF006769. RibD. 1 hit.
SUPFAMSSF53927. Cytidine_deaminase-like. 1 hit.
SSF53597. SSF53597. 1 hit.
TIGRFAMsTIGR00326. eubact_ribD. 1 hit.
TIGR00227. ribD_Cterm. 1 hit.
PROSITEPS00903. CYT_DCMP_DEAMINASES. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameB5E857_GEOBB
AccessionPrimary (citable) accession number: B5E857
Entry history
Integrated into UniProtKB/TrEMBL: October 14, 2008
Last sequence update: October 14, 2008
Last modified: May 1, 2013
This is version 32 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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