Skip Header

Contribute Send feedback
Read comments (?) or add your own

B5DFG1 (B5DFG1_RAT) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 34. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·Ontologies·Sequences·References·Cross-refs·Entry infoCustomize order
to top of pageNames·Attributes·Ontologies·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein namesSubmitted name:
Pink1 protein EMBL AAI69047.1
Gene names
Name:Pink1 RGD 1305769
OrganismRattus norvegicus (Rat)
Taxonomic identifier10116 [NCBI]
Taxonomic lineageEukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Rattus

Protein attributes

Sequence length580 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

Sequences

Sequence LengthMass (Da)Tools
B5DFG1 [UniParc].

Last modified October 14, 2008. Version 1.
Checksum: D8CA866625AA24CA

FASTA58063,219
        10         20         30         40         50         60 
MAVRQALGRG LQLGRALLLR FAPKPGPVSG WGKPGPGAAW GRGERPGRVS SPGAQPRPLG 

        70         80         90        100        110        120 
LPLPDRYRFF RQSVAGLAAR IQRQFVVRAR GGAGPCGRAV FLAFGLGLGL IEEKQAESRR 

       130        140        150        160        170        180 
AASACQEIQA IFTQKNKQVS DPLDTRRWQG FRLEDYLIGQ AIGKGCNAAV YEATMPTLPQ 

       190        200        210        220        230        240 
HLEKAKHLGL LGKGPDVVSK GADGEQAPGA PAFPFAIKMM WNISAGSSSE AILSKMSQEL 

       250        260        270        280        290        300 
VPASRMALDG EYGAVTYRRS RDGPKQLAPH PNIIRVFRAF TSSVPLLPGA LADYPDMLPP 

       310        320        330        340        350        360 
HYYPEGLGHG RTLFLVMKNY PCTLRQYLEE QTPSSRLATM MTLQLLEGVD HLVQQGIAHR 

       370        380        390        400        410        420 
DLKSDNILVE WDSDGCPWLV ISDFGCCLAD ERVGLQLPFN SSSVERGGNG SLMAPEVSTA 

       430        440        450        460        470        480 
HSGPHAVIDY SKADTWAVGA IAYEIFGLAN PFYGQGSAHL ESRSYQEAQL PEMPKSVPPE 

       490        500        510        520        530        540 
TRQLVRSLLQ REANKRPSAR IAANVLHLSL WGEHLLALKN LKLDKMIAWL LQQSAATLLA 

       550        560        570        580 
DRLREKSCVE TKLQMLFLAN LECEALCQAA LLLSSWRAAP

« Hide

References

[1]"The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
The MGC Project Team
Gerhard D.S., Wagner L., Feingold E.A., Shenmen C.M., Grouse L.H., Schuler G., Klein S.L., Old S., Rasooly R., Good P., Guyer M., Peck A.M., Derge J.G., Lipman D., Collins F.S., Jang W., Sherry S., Feolo M. expand/collapse author list , Misquitta L., Lee E., Rotmistrovsky K., Greenhut S.F., Schaefer C.F., Buetow K., Bonner T.I., Haussler D., Kent J., Kiekhaus M., Furey T., Brent M., Prange C., Schreiber K., Shapiro N., Bhat N.K., Hopkins R.F., Hsie F., Driscoll T., Soares M.B., Casavant T.L., Scheetz T.E., Brown-stein M.J., Usdin T.B., Toshiyuki S., Carninci P., Piao Y., Dudekula D.B., Ko M.S., Kawakami K., Suzuki Y., Sugano S., Gruber C.E., Smith M.R., Simmons B., Moore T., Waterman R., Johnson S.L., Ruan Y., Wei C.L., Mathavan S., Gunaratne P.H., Wu J., Garcia A.M., Hulyk S.W., Fuh E., Yuan Y., Sneed A., Kowis C., Hodgson A., Muzny D.M., McPherson J., Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., Sanchez A., Whiting M., Madari A., Young A.C., Wetherby K.D., Granite S.J., Kwong P.N., Brinkley C.P., Pearson R.L., Bouffard G.G., Blakesly R.W., Green E.D., Dickson M.C., Rodriguez A.C., Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Griffith M., Griffith O.L., Krzywinski M.I., Liao N., Morin R., Morrin R., Palmquist D., Petrescu A.S., Skalska U., Smailus D.E., Stott J.M., Schnerch A., Schein J.E., Jones S.J., Holt R.A., Baross A., Marra M.A., Clifton S., Makowski K.A., Bosak S., Malek J.
Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Tissue: Heart EMBL AAI69047.1.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		BC169047 mRNA. Translation: AAI69047.1.
IPIIPI00208560.
UniGeneRn.219286.
Rn.219317.

3D structure databases

ModBaseSearch...

Protein-protein interaction databases

STRING10116.ENSRNOP00000020820.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Phylogenomic databases

eggNOGCOG0515.
HOGENOMHOG000231649.
HOVERGENHBG053601.
OMAHGRTLFL.
OrthoDBEOG480HW9.

Gene expression databases

ArrayExpressB5DFG1.
GenevestigatorB5DFG1.

Family and domain databases

InterProIPR011009. Kinase-like_dom.
IPR000719. Prot_kinase_cat_dom.
IPR008271. Ser/Thr_kinase_AS.
[Graphical view]
PfamPF00069. Pkinase. 1 hit.
[Graphical view]
SUPFAMSSF56112. Kinase_like. 1 hit.
PROSITEPS50011. PROTEIN_KINASE_DOM. 1 hit.
PS00108. PROTEIN_KINASE_ST. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

NextBio35565234.

Entry information

Entry nameB5DFG1_RAT
AccessionPrimary (citable) accession number: B5DFG1
Entry history
Integrated into UniProtKB/TrEMBL: October 14, 2008
Last sequence update: October 14, 2008
Last modified: May 1, 2013
This is version 34 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·Ontologies·Sequences·References·Cross-refs·Entry info