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Protein
Submitted name:

Radical S-adenosyl methionine and flavodoxin domains 1 (Predicted), isoform CRA_a

Gene

Tyw1

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Names & Taxonomyi

Protein namesi
Submitted name:
Radical S-adenosyl methionine and flavodoxin domains 1 (Predicted), isoform CRA_aImported
Submitted name:
tRNA-yW synthesizing protein 1 homologImported
Submitted name:
tRNA-yW synthesizing protein 1 homolog (S. cerevisiae)Imported
Gene namesi
Name:Tyw1Imported
Synonyms:Rsafd1_predictedImported
ORF Names:rCG_21565Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 12

Organism-specific databases

RGDi1310420. Tyw1.

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei22 – 42HelicalSequence analysisAdd BLAST21

GO - Cellular componenti

Keywords - Cellular componenti

Membrane

Expressioni

Gene expression databases

BgeeiENSRNOG00000024352.

Interactioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000038092.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini74 – 232Flavodoxin-likeInterPro annotationAdd BLAST159

Keywords - Domaini

Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

eggNOGiKOG1160. Eukaryota.
COG0369. LUCA.
COG0731. LUCA.
GeneTreeiENSGT00510000047059.
HOGENOMiHOG000216584.
HOVERGENiHBG108623.
KOiK15449.
OMAiEGDCNVV.
OrthoDBiEOG091G06T8.
TreeFamiTF300773.

Family and domain databases

Gene3Di3.20.20.70. 1 hit.
3.40.50.360. 1 hit.
InterProiView protein in InterPro
IPR013785. Aldolase_TIM.
IPR001094. Flavdoxin-like.
IPR008254. Flavodoxin/NO_synth.
IPR029039. Flavoprotein-like_dom.
IPR007197. rSAM.
IPR013917. tRNA_wybutosine-synth.
IPR034556. tRNA_wybutosine-synthase.
PANTHERiPTHR13930. PTHR13930. 1 hit.
PfamiView protein in Pfam
PF00258. Flavodoxin_1. 1 hit.
PF04055. Radical_SAM. 1 hit.
PF08608. Wyosine_form. 1 hit.
PRINTSiPR00369. FLAVODOXIN.
SFLDiSFLDG01071. tRNA_wybutosine-synthesizing. 1 hit.
SFLDS00029. Radical_SAM. 1 hit.
SUPFAMiSSF52218. SSF52218. 1 hit.
PROSITEiView protein in PROSITE
PS50902. FLAVODOXIN_LIKE. 1 hit.

Sequencei

Sequence statusi: Complete.

B5DF48-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGPPLDVWDF SSPLLSLWMN RFYIYMGCAL GVTLWFCVQI IIKKQVTRSQ
60 70 80 90 100
EKSVPGAPDS SLSPQEKHTH VSGVKIFYGS QTGTAKGFAV VLAKAVTSLD
110 120 130 140 150
LPVAIINLKE YDPDDNLIGE ITSKNVCAFL VATYTDGRPT ESAEWFCKWL
160 170 180 190 200
EEAANDFRFG KTYLKGLRYA VFGLGDSAYR SHFNKVSTNV DKWLWMLGAQ
210 220 230 240 250
RVLTRGEGDC NAVQSKHGSI EADFTAWKTK FISRLQALQR GEKKGCGGDC
260 270 280 290 300
KRGKCESAQH GPGEVRSHPH GELHPGDAEE EEPCESSSED EHGTKGYQSL
310 320 330 340 350
NSVVDVEDLG NIMNPVKREK REKAQPEEKV VVHRNSEKNE DSEARAMITP
360 370 380 390 400
ALREALTKQG YQLIGSHSGV KLCRWTKSML RGRGGCYKHT FYGIESHRCM
410 420 430 440 450
EATPSLACAN KCVFCWRHHT NPVGTEWRWK MDQPELILKE AIENHRNMIK
460 470 480 490 500
QFKGVPGLKA ERFEEGMEVK HCALSLVGEP IMYPEINRLL KLLHQHGIST
510 520 530 540 550
FLVTNAQFPE EIRNLTPVTQ LYVSVDASTK DSLKKIDRPL FKDFWQRFLD
560 570 580 590 600
SLQALSAKQQ RTVYRLTLVK CWNVDELQAY AELVSLGSPD FIEVKGVTYC
610 620 630 640 650
GESAASSLTM ANVPWHEEVV RFVRELVDLL PDYEIACEHE HSNCLLIGHK
660 670 680 690 700
KFKIGGEWWT WIDYSRFQEL VLQYEESGGS KTFSSKDYMA RTPQWALFGA
710 720
RERGFDPKDT RYQRKNKTKD ISGC
Length:724
Mass (Da):82,086
Last modified:October 14, 2008 - v1
Checksum:iC04C1D4D32E118AF
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR07035983 Genomic DNA. No translation available.
AABR07035984 Genomic DNA. No translation available.
AABR07035985 Genomic DNA. No translation available.
AABR07072285 Genomic DNA. No translation available.
AC116246 Genomic DNA. No translation available.
BC168924 mRNA. Translation: AAI68924.1.
CH473973 Genomic DNA. Translation: EDM13460.1.
RefSeqiNP_001100607.1. NM_001107137.1.
UniGeneiRn.163211.

Genome annotation databases

EnsembliENSRNOT00000038092; ENSRNOP00000038092; ENSRNOG00000024352.
GeneIDi304423.
KEGGirno:304423.

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.

Entry informationi

Entry nameiB5DF48_RAT
AccessioniPrimary (citable) accession number: B5DF48
Entry historyiIntegrated into UniProtKB/TrEMBL: October 14, 2008
Last sequence update: October 14, 2008
Last modified: June 7, 2017
This is version 70 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported