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Protein
Submitted name:

Radical S-adenosyl methionine and flavodoxin domains 1 (Predicted), isoform CRA_a

Gene

Tyw1

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Names & Taxonomyi

Protein namesi
Submitted name:
Radical S-adenosyl methionine and flavodoxin domains 1 (Predicted), isoform CRA_aImported
Submitted name:
tRNA-yW synthesizing protein 1 homologImported
Submitted name:
tRNA-yW synthesizing protein 1 homolog (S. cerevisiae)Imported
Gene namesi
Name:Tyw1Imported
Synonyms:Rsafd1_predictedImported
ORF Names:rCG_21565Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 12

Organism-specific databases

RGDi1310420 Tyw1

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei22 – 42HelicalSequence analysisAdd BLAST21

Keywords - Cellular componenti

Membrane

PTM / Processingi

Proteomic databases

PRIDEiB5DF48

Expressioni

Gene expression databases

BgeeiENSRNOG00000024352

Interactioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000038092

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini74 – 232Flavodoxin-likeInterPro annotationAdd BLAST159

Keywords - Domaini

Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

eggNOGiKOG1160 Eukaryota
COG0369 LUCA
COG0731 LUCA
GeneTreeiENSGT00510000047059
HOGENOMiHOG000216584
HOVERGENiHBG108623
KOiK15449
OMAiFKDFWPR
OrthoDBiEOG091G06T8
TreeFamiTF300773

Family and domain databases

Gene3Di3.20.20.70, 1 hit
3.40.50.360, 1 hit
InterProiView protein in InterPro
IPR013785 Aldolase_TIM
IPR001094 Flavdoxin-like
IPR008254 Flavodoxin/NO_synth
IPR029039 Flavoprotein-like_sf
IPR007197 rSAM
IPR013917 tRNA_wybutosine-synth
IPR034556 tRNA_wybutosine-synthase
PANTHERiPTHR13930 PTHR13930, 1 hit
PfamiView protein in Pfam
PF00258 Flavodoxin_1, 1 hit
PF04055 Radical_SAM, 1 hit
PF08608 Wyosine_form, 1 hit
PRINTSiPR00369 FLAVODOXIN
SFLDiSFLDG01071 tRNA_wybutosine-synthesizing, 1 hit
SFLDS00029 Radical_SAM, 1 hit
SUPFAMiSSF52218 SSF52218, 1 hit
PROSITEiView protein in PROSITE
PS50902 FLAVODOXIN_LIKE, 1 hit

Sequencei

Sequence statusi: Complete.

B5DF48-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGPPLDVWDF SSPLLSLWMN RFYIYMGCAL GVTLWFCVQI IIKKQVTRSQ
60 70 80 90 100
EKSVPGAPDS SLSPQEKHTH VSGVKIFYGS QTGTAKGFAV VLAKAVTSLD
110 120 130 140 150
LPVAIINLKE YDPDDNLIGE ITSKNVCAFL VATYTDGRPT ESAEWFCKWL
160 170 180 190 200
EEAANDFRFG KTYLKGLRYA VFGLGDSAYR SHFNKVSTNV DKWLWMLGAQ
210 220 230 240 250
RVLTRGEGDC NAVQSKHGSI EADFTAWKTK FISRLQALQR GEKKGCGGDC
260 270 280 290 300
KRGKCESAQH GPGEVRSHPH GELHPGDAEE EEPCESSSED EHGTKGYQSL
310 320 330 340 350
NSVVDVEDLG NIMNPVKREK REKAQPEEKV VVHRNSEKNE DSEARAMITP
360 370 380 390 400
ALREALTKQG YQLIGSHSGV KLCRWTKSML RGRGGCYKHT FYGIESHRCM
410 420 430 440 450
EATPSLACAN KCVFCWRHHT NPVGTEWRWK MDQPELILKE AIENHRNMIK
460 470 480 490 500
QFKGVPGLKA ERFEEGMEVK HCALSLVGEP IMYPEINRLL KLLHQHGIST
510 520 530 540 550
FLVTNAQFPE EIRNLTPVTQ LYVSVDASTK DSLKKIDRPL FKDFWQRFLD
560 570 580 590 600
SLQALSAKQQ RTVYRLTLVK CWNVDELQAY AELVSLGSPD FIEVKGVTYC
610 620 630 640 650
GESAASSLTM ANVPWHEEVV RFVRELVDLL PDYEIACEHE HSNCLLIGHK
660 670 680 690 700
KFKIGGEWWT WIDYSRFQEL VLQYEESGGS KTFSSKDYMA RTPQWALFGA
710 720
RERGFDPKDT RYQRKNKTKD ISGC
Length:724
Mass (Da):82,086
Last modified:October 14, 2008 - v1
Checksum:iC04C1D4D32E118AF
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR07035983 Genomic DNA No translation available.
AABR07035984 Genomic DNA No translation available.
AABR07035985 Genomic DNA No translation available.
AABR07072285 Genomic DNA No translation available.
AC116246 Genomic DNA No translation available.
BC168924 mRNA Translation: AAI68924.1
CH473973 Genomic DNA Translation: EDM13460.1
RefSeqiNP_001100607.1, NM_001107137.1
UniGeneiRn.163211

Genome annotation databases

EnsembliENSRNOT00000038092; ENSRNOP00000038092; ENSRNOG00000024352
GeneIDi304423
KEGGirno:304423

Similar proteinsi

Entry informationi

Entry nameiB5DF48_RAT
AccessioniPrimary (citable) accession number: B5DF48
Entry historyiIntegrated into UniProtKB/TrEMBL: October 14, 2008
Last sequence update: October 14, 2008
Last modified: May 23, 2018
This is version 73 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported

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