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Protein

Lysyl oxidase homolog 2

Gene

Loxl2

Organism
Rattus norvegicus (Rat)
Status
Reviewed-Annotation score: Annotation score: 5 out of 5-Experimental evidence at transcript leveli

Functioni

Mediates the post-translational oxidative deamination of lysine residues on target proteins leading to the formation of deaminated lysine (allysine). When secreted in extracellular matrix, promotes cross-linking of extracellular matrix proteins by mediating oxidative deamination of peptidyl lysine residues in precursors to fibrous collagen and elastin. Acts as a regulator of sprouting angiogenesis, probably via collagen IV scaffolding. When nuclear, acts as a transcription corepressor and specifically mediates deamination of trimethylated 'Lys-4' of histone H3 (H3K4me3), a specific tag for epigenetic transcriptional activation. Involved in epithelial to mesenchymal transition (EMT) via interaction with SNAI1 and participates in repression of E-cadherin, probably by mediating deamination of histone H3. Acts as a regulator of chondrocyte differentiation, probably by regulating expression of factors that control chondrocyte differentiation.By similarity

Catalytic activityi

[Protein]-L-lysine + O2 + H2O = [protein]-(S)-2-amino-6-oxohexanoate + NH3 + H2O2.By similarity

Cofactori

Protein has several cofactor binding sites:

Enzyme regulationi

Specifically inhibited by a mouse monoclonal antibody AB0023, inhibition occurs in a non-competitive manner.By similarity

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Chromatin regulator, Oxidoreductase, Repressor

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

Copper, Metal-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Lysyl oxidase homolog 2 (EC:1.4.3.13By similarity)
Alternative name(s):
Lysyl oxidase-like protein 2
Gene namesi
Name:Loxl2
OrganismiRattus norvegicus (Rat)
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Unplaced

Organism-specific databases

RGDi1308435. Loxl2.

Subcellular locationi

GO - Cellular componenti

  • basement membrane Source: UniProtKB
  • chromosome Source: UniProtKB-SubCell
  • extracellular space Source: UniProtKB
  • membrane Source: InterPro
  • nucleus Source: UniProtKB
Complete GO annotation...

Keywords - Cellular componenti

Basement membrane, Chromosome, Extracellular matrix, Nucleus, Secreted

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 25Sequence analysisAdd BLAST25
ChainiPRO_000041800226 – 776Lysyl oxidase homolog 2Add BLAST751

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Disulfide bondi87 ↔ 151PROSITE-ProRule annotation
Disulfide bondi100 ↔ 161PROSITE-ProRule annotation
Disulfide bondi131 ↔ 141PROSITE-ProRule annotation
Disulfide bondi221 ↔ 294PROSITE-ProRule annotation
Disulfide bondi234 ↔ 304PROSITE-ProRule annotation
Glycosylationi267N-linked (GlcNAc...)Sequence analysis1
Disulfide bondi268 ↔ 278PROSITE-ProRule annotation
Glycosylationi291N-linked (GlcNAc...)Sequence analysis1
Disulfide bondi354 ↔ 417PROSITE-ProRule annotation
Disulfide bondi367 ↔ 427PROSITE-ProRule annotation
Disulfide bondi398 ↔ 408PROSITE-ProRule annotation
Glycosylationi458N-linked (GlcNAc...)Sequence analysis1
Disulfide bondi467 ↔ 532PROSITE-ProRule annotation
Disulfide bondi480 ↔ 545PROSITE-ProRule annotation
Disulfide bondi514 ↔ 524PROSITE-ProRule annotation
Glycosylationi646N-linked (GlcNAc...)Sequence analysis1
Modified residuei6912',4',5'-topaquinoneBy similarity1

Post-translational modificationi

The lysine tyrosylquinone cross-link (LTQ) is generated by condensation of the epsilon-amino group of a lysine with a topaquinone produced by oxidation of tyrosine.By similarity
N-glycosylated. N-glycosylation on Asn-458 and Asn-646 may be essential for proper folding and secretion; may be composed of a fucosylated carbohydrates attached to a trimannose N-linked glycan core (By similarity).By similarity

Keywords - PTMi

Disulfide bond, Glycoprotein, LTQ, TPQ

Proteomic databases

PaxDbiB5DF27.
PeptideAtlasiB5DF27.

Expressioni

Gene expression databases

BgeeiENSRNOG00000016758.

Interactioni

Subunit structurei

Component of some chromatin repressor complex. Interacts with SNAI1 (By similarity).By similarity

GO - Molecular functioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000055457.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini61 – 162SRCR 1PROSITE-ProRule annotationAdd BLAST102
Domaini191 – 305SRCR 2PROSITE-ProRule annotationAdd BLAST115
Domaini329 – 428SRCR 3PROSITE-ProRule annotationAdd BLAST100
Domaini438 – 546SRCR 4PROSITE-ProRule annotationAdd BLAST109

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Regioni550 – 753Lysyl-oxidase likeBy similarityAdd BLAST204

Domaini

The fourth SRCR domain plays a important role in optimizing the catalytic activity of the lysyl-oxidase like (LOX) catalytic domain.By similarity

Sequence similaritiesi

Belongs to the lysyl oxidase family.Curated
Contains 4 SRCR domains.PROSITE-ProRule annotation

Keywords - Domaini

Repeat, Signal

Phylogenomic databases

HOGENOMiHOG000220841.
HOVERGENiHBG052336.
InParanoidiB5DF27.
KOiK00280.

Family and domain databases

Gene3Di3.10.250.10. 4 hits.
InterProiIPR001695. Lysyl_oxidase.
IPR019828. Lysyl_oxidase_CS.
IPR001190. SRCR.
IPR017448. SRCR-like_dom.
[Graphical view]
PfamiPF01186. Lysyl_oxidase. 1 hit.
PF00530. SRCR. 4 hits.
[Graphical view]
PRINTSiPR00074. LYSYLOXIDASE.
PR00258. SPERACTRCPTR.
SMARTiSM00202. SR. 4 hits.
[Graphical view]
SUPFAMiSSF56487. SSF56487. 4 hits.
PROSITEiPS00926. LYSYL_OXIDASE. 1 hit.
PS00420. SRCR_1. 2 hits.
PS50287. SRCR_2. 4 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

B5DF27-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MEIPFGSCLY SCLALLVLLP SLSLAQYESW PYQLQYPEYF QQPPPEHHQH
60 70 80 90 100
QVPSDVVKIQ VRLAGQKRKH NEGRVEVYYE GQWGTVCDDD FSIHAAHVVC
110 120 130 140 150
REVGYVEAKS WTASSSYGPG EGPIWLDNIY CTGKESTLAA CSSNGWGVTD
160 170 180 190 200
CKHPEDVGVV CSEKRIPGFK FDNSLINQIE SLNIQVEDIR IRPILSAFRH
210 220 230 240 250
RKPVTEGYVE VKEGKAWKQI CDKHWTAKNS HVVCGMFGFP AEKTYNPKAY
260 270 280 290 300
KTFASRRKLR YWKFSMNCTG TEAHISSCKL GPPMFRDPVK NATCENGQPA
310 320 330 340 350
VVSCVPSQIF SPDGPSRFRK AYKPEQPLVR LRGGAQVGEG RVEVLKNGEW
360 370 380 390 400
GTVCDDKWDL VSASVVCREL GFGTAKEAVT GSRLGQGIGP IHLNEVQCTG
410 420 430 440 450
TEKSIIDCKL NTESQGCNHE EDAGVRCNIP IMGFQKKVRL NGGRNPYEGR
460 470 480 490 500
VEVLTERNGS LVWGNVCGQN WGIVEAMVVC RQLGLGFASN AFQETWYWHG
510 520 530 540 550
NIFANKVIMS GVKCSGTELS LAHCRHDEEV VCPEGGVQYG AGVACSETAP
560 570 580 590 600
DLVLNAEIVQ QTAYLEDRPM ALLQCAMEEN CLSASAVHTD PTRGHRRLLR
610 620 630 640 650
FSSQIHNNGQ SDFRPKNGRH AWIWHDCHRH YHSMEVFTYY DLLSLNGTKV
660 670 680 690 700
AEGHKASFCL EDTECEGDIQ KSYECANFGE QGITMGCWDM YRHDIDCQWI
710 720 730 740 750
DITDVPPGDY LFQVVINPNY EVPESDFSNN IMKCRSRYDG YRIWMYNCHV
760 770
GGAFSEETEQ KFEHFSGLLN NQLSVQ
Length:776
Mass (Da):87,185
Last modified:June 13, 2012 - v2
Checksum:i0ACE3544E7E8278A
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti154P → T in AAI68900 (PubMed:15489334).Curated1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC168900 mRNA. Translation: AAI68900.1.
RefSeqiNP_001099517.2. NM_001106047.2.
UniGeneiRn.219739.

Genome annotation databases

GeneIDi290350.
KEGGirno:290350.
UCSCiRGD:1308435. rat.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC168900 mRNA. Translation: AAI68900.1.
RefSeqiNP_001099517.2. NM_001106047.2.
UniGeneiRn.219739.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000055457.

Proteomic databases

PaxDbiB5DF27.
PeptideAtlasiB5DF27.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi290350.
KEGGirno:290350.
UCSCiRGD:1308435. rat.

Organism-specific databases

CTDi4017.
RGDi1308435. Loxl2.

Phylogenomic databases

HOGENOMiHOG000220841.
HOVERGENiHBG052336.
InParanoidiB5DF27.
KOiK00280.

Miscellaneous databases

PROiB5DF27.

Gene expression databases

BgeeiENSRNOG00000016758.

Family and domain databases

Gene3Di3.10.250.10. 4 hits.
InterProiIPR001695. Lysyl_oxidase.
IPR019828. Lysyl_oxidase_CS.
IPR001190. SRCR.
IPR017448. SRCR-like_dom.
[Graphical view]
PfamiPF01186. Lysyl_oxidase. 1 hit.
PF00530. SRCR. 4 hits.
[Graphical view]
PRINTSiPR00074. LYSYLOXIDASE.
PR00258. SPERACTRCPTR.
SMARTiSM00202. SR. 4 hits.
[Graphical view]
SUPFAMiSSF56487. SSF56487. 4 hits.
PROSITEiPS00926. LYSYL_OXIDASE. 1 hit.
PS00420. SRCR_1. 2 hits.
PS50287. SRCR_2. 4 hits.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiLOXL2_RAT
AccessioniPrimary (citable) accession number: B5DF27
Secondary accession number(s): F1LPM2
Entry historyi
Integrated into UniProtKB/Swiss-Prot: June 13, 2012
Last sequence update: June 13, 2012
Last modified: September 7, 2016
This is version 56 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.