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Protein
Submitted name:

RCG63400

Gene

Trim59

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

LigandMetal-binding, Zinc

Names & Taxonomyi

Protein namesi
Submitted name:
RCG63400Imported
Submitted name:
Tripartite motif-containing 59Imported
Gene namesi
Name:Trim59Imported
ORF Names:rCG_63400Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 2

Organism-specific databases

RGDi1311956. Trim59.

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei329 – 348HelicalSequence analysisAdd BLAST20

GO - Cellular componenti

Keywords - Cellular componenti

Membrane

Expressioni

Gene expression databases

BgeeiENSRNOG00000010515.

Interactioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000013987.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini10 – 60RING-typeInterPro annotationAdd BLAST51
Domaini92 – 134B box-typeInterPro annotationAdd BLAST43

Keywords - Domaini

Transmembrane, Transmembrane helixSequence analysis, Zinc-fingerPROSITE-ProRule annotationSAAS annotation

Phylogenomic databases

eggNOGiENOG410ITG5. Eukaryota.
ENOG410YH9X. LUCA.
GeneTreeiENSGT00760000118878.
HOGENOMiHOG000013095.
HOVERGENiHBG060002.
KOiK12028.
OMAiKEFMWKI.
OrthoDBiEOG091G06VP.
TreeFamiTF331669.

Family and domain databases

CDDicd00162. RING. 1 hit.
Gene3Di3.30.40.10. 1 hit.
InterProiView protein in InterPro
IPR027370. Znf-RING_LisH.
IPR000315. Znf_B-box.
IPR001841. Znf_RING.
IPR013083. Znf_RING/FYVE/PHD.
IPR017907. Znf_RING_CS.
PfamiView protein in Pfam
PF00643. zf-B_box. 1 hit.
PF13445. zf-RING_UBOX. 1 hit.
SMARTiView protein in SMART
SM00184. RING. 1 hit.
PROSITEiView protein in PROSITE
PS50119. ZF_BBOX. 1 hit.
PS00518. ZF_RING_1. 1 hit.
PS50089. ZF_RING_2. 1 hit.

Sequencei

Sequence statusi: Complete.

B5DF13-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MHNFEDELTC PICYSIFDDP RVLPCSHTFC RNCLENVLQA SGNFYIWRPL
60 70 80 90 100
RIPLKCPNCR SIIEIASTGI ESLPVNFALR AIIEKYQQED HPDVVTCPEH
110 120 130 140 150
YRQPLNVYCL LDKKLVCGHC LTIGQHHGHP IDDLQSAYLK EKDTPQKLFK
160 170 180 190 200
QLTDTHWTDI TRLIEKLEEQ KCHSEKIVQS DKEVVLQYFK ELTDTLEQKK
210 220 230 240 250
KFFLAALCDV GKMINQEYTP QIERMKEIRE QQLELMTMTT SLQDESPLKF
260 270 280 290 300
LEKIDDVRQR VQMLKQRPLP EVQPVEIYPR VSNVLKEEWS RTEIGRIKKA
310 320 330 340 350
VIPEMRISSK RMPCSWPDKD EKEMECFKIL NIAIVSLISV ILMLILLFNH
360 370 380 390 400
HIITFLNEIT SICFSEVFLS VYQSLSKNLY DLKNTVCYTL YLLKEFMWKI

VSC
Length:403
Mass (Da):47,357
Last modified:October 14, 2008 - v1
Checksum:iE88BB8CE3CB32FC3
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR07011673 Genomic DNA. No translation available.
BC168884 mRNA. Translation: AAI68884.1.
CH473976 Genomic DNA. Translation: EDM00910.1.
RefSeqiNP_001102415.1. NM_001108945.1.
XP_006232546.1. XM_006232484.3.
XP_006232547.1. XM_006232485.3.
UniGeneiRn.205621.

Genome annotation databases

EnsembliENSRNOT00000013987; ENSRNOP00000013987; ENSRNOG00000010515.
GeneIDi365813.
KEGGirno:365813.
UCSCiRGD:1311956. rat.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR07011673 Genomic DNA. No translation available.
BC168884 mRNA. Translation: AAI68884.1.
CH473976 Genomic DNA. Translation: EDM00910.1.
RefSeqiNP_001102415.1. NM_001108945.1.
XP_006232546.1. XM_006232484.3.
XP_006232547.1. XM_006232485.3.
UniGeneiRn.205621.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000013987.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSRNOT00000013987; ENSRNOP00000013987; ENSRNOG00000010515.
GeneIDi365813.
KEGGirno:365813.
UCSCiRGD:1311956. rat.

Organism-specific databases

CTDi286827.
RGDi1311956. Trim59.

Phylogenomic databases

eggNOGiENOG410ITG5. Eukaryota.
ENOG410YH9X. LUCA.
GeneTreeiENSGT00760000118878.
HOGENOMiHOG000013095.
HOVERGENiHBG060002.
KOiK12028.
OMAiKEFMWKI.
OrthoDBiEOG091G06VP.
TreeFamiTF331669.

Gene expression databases

BgeeiENSRNOG00000010515.

Family and domain databases

CDDicd00162. RING. 1 hit.
Gene3Di3.30.40.10. 1 hit.
InterProiView protein in InterPro
IPR027370. Znf-RING_LisH.
IPR000315. Znf_B-box.
IPR001841. Znf_RING.
IPR013083. Znf_RING/FYVE/PHD.
IPR017907. Znf_RING_CS.
PfamiView protein in Pfam
PF00643. zf-B_box. 1 hit.
PF13445. zf-RING_UBOX. 1 hit.
SMARTiView protein in SMART
SM00184. RING. 1 hit.
PROSITEiView protein in PROSITE
PS50119. ZF_BBOX. 1 hit.
PS00518. ZF_RING_1. 1 hit.
PS50089. ZF_RING_2. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiB5DF13_RAT
AccessioniPrimary (citable) accession number: B5DF13
Entry historyiIntegrated into UniProtKB/TrEMBL: October 14, 2008
Last sequence update: October 14, 2008
Last modified: June 7, 2017
This is version 75 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.