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Protein
Submitted name:

THO complex 3

Gene

Thoc3

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Biological processi

Enzyme and pathway databases

ReactomeiR-RNO-109688. Cleavage of Growing Transcript in the Termination Region.
R-RNO-159236. Transport of Mature mRNA derived from an Intron-Containing Transcript.
R-RNO-72187. mRNA 3'-end processing.

Names & Taxonomyi

Protein namesi
Submitted name:
THO complex 3Imported
Submitted name:
THO complex 3 (Predicted)Imported
Gene namesi
Name:Thoc3Imported
Synonyms:Thoc3_predictedImported
ORF Names:rCG_24142Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 17

Organism-specific databases

RGDi1311669. Thoc3.

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Expressioni

Gene expression databases

BgeeiENSRNOG00000000104.

Interactioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000000116.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini51 – 303WD_REPEATS_REGIONInterPro annotationAdd BLAST253
Repeati51 – 92WDPROSITE-ProRule annotationAdd BLAST42
Repeati95 – 137WDPROSITE-ProRule annotationAdd BLAST43
Repeati220 – 254WDPROSITE-ProRule annotationAdd BLAST35

Keywords - Domaini

RepeatSAAS annotation, WD repeatPROSITE-ProRule annotationSAAS annotation

Phylogenomic databases

eggNOGiKOG1407. Eukaryota.
ENOG410XPZJ. LUCA.
GeneTreeiENSGT00890000139492.
HOGENOMiHOG000264781.
HOVERGENiHBG059732.
KOiK12880.
OMAiLWDTTDW.
OrthoDBiEOG091G0BFM.
TreeFamiTF314069.

Family and domain databases

Gene3Di2.130.10.10. 2 hits.
InterProiView protein in InterPro
IPR024977. Apc4_WD40_dom.
IPR020472. G-protein_beta_WD-40_rep.
IPR013979. TIF_beta_prop-like.
IPR015943. WD40/YVTN_repeat-like_dom.
IPR001680. WD40_repeat.
IPR017986. WD40_repeat_dom.
IPR036322. WD40_repeat_dom_sf.
PfamiView protein in Pfam
PF12894. ANAPC4_WD40. 1 hit.
PF08662. eIF2A. 1 hit.
PF00400. WD40. 2 hits.
PRINTSiPR00320. GPROTEINBRPT.
SMARTiView protein in SMART
SM00320. WD40. 6 hits.
SUPFAMiSSF50978. SSF50978. 1 hit.
PROSITEiView protein in PROSITE
PS50082. WD_REPEATS_2. 3 hits.
PS50294. WD_REPEATS_REGION. 1 hit.

Sequencei

Sequence statusi: Complete.

B5DEY5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAVPAAVLGP SALSQSGPGS MAPWCSVSSG PSRYVLGMQE LFRGHSKTRE
60 70 80 90 100
FPAHSAKVHS VAWSCDGRRL ASGSFDKTAS VFLLEKDRLV KENNYRGHGD
110 120 130 140 150
SVDQLCWHPS NPDLFVTASG DKTIRIWDVR TTKCIATVNT KGENINICWS
160 170 180 190 200
PDGQTIAVGN KDDVVTFIDA KTHRSKAEEQ FKFEVNEISW NNDNNMFFLT
210 220 230 240 250
NGNGCINILS YPELKPVQSI NAHPSNCICI KFDPMGKYFA TGSADALVSL
260 270 280 290 300
WDVDELVCVR CFSRLDWPVR TLSFSHDGKM LASASEDHFI DIAEVETGDK
310 320 330 340 350
LWEVQCESPT FTVAWHPKRP LLAFACDDKD GKYDSSREAG TVKLFGLPND

S
Length:351
Mass (Da):38,796
Last modified:October 14, 2008 - v1
Checksum:i4A2CA9F8DE446658
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR07027010 Genomic DNA. No translation available.
BC168852 mRNA. Translation: AAI68852.1.
CH474032 Genomic DNA. Translation: EDL94059.1.
RefSeqiNP_001099529.1. NM_001106059.1.
UniGeneiRn.101956.

Genome annotation databases

EnsembliENSRNOT00000000116; ENSRNOP00000000116; ENSRNOG00000000104.
GeneIDi290519.
KEGGirno:290519.
UCSCiRGD:1311669. rat.

Similar proteinsi

Entry informationi

Entry nameiB5DEY5_RAT
AccessioniPrimary (citable) accession number: B5DEY5
Entry historyiIntegrated into UniProtKB/TrEMBL: October 14, 2008
Last sequence update: October 14, 2008
Last modified: October 25, 2017
This is version 77 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported