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B5DEF6

- B5DEF6_RAT

UniProt

B5DEF6 - B5DEF6_RAT

Protein
Submitted name:

RGD1310159 protein

Gene

Acad10

Organism
Rattus norvegicus (Rat)
Status
Unreviewed - Annotation score: 1 out of 5- Experimental evidence at transcript leveli
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    • History
      Entry version 40 (01 Oct 2014)
      Sequence version 1 (14 Oct 2008)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. acyl-CoA dehydrogenase activity Source: InterPro
    2. flavin adenine dinucleotide binding Source: InterPro
    3. hydrolase activity Source: InterPro
    4. transferase activity, transferring phosphorus-containing groups Source: InterPro

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    RGD1310159 proteinImported
    Gene namesi
    Name:Acad10Imported
    Synonyms:RGD1310159Imported
    OrganismiRattus norvegicus (Rat)Imported
    Taxonomic identifieri10116 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus

    Organism-specific databases

    RGDi1310159. Acad10.

    PTM / Processingi

    Proteomic databases

    PRIDEiB5DEF6.

    Expressioni

    Gene expression databases

    GenevestigatoriB5DEF6.

    Interactioni

    Protein-protein interaction databases

    STRINGi10116.ENSRNOP00000054244.

    Structurei

    3D structure databases

    ProteinModelPortaliB5DEF6.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the acyl-CoA dehydrogenase family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG1960.
    HOGENOMiHOG000131660.
    HOVERGENiHBG057142.
    PhylomeDBiB5DEF6.

    Family and domain databases

    Gene3Di1.10.150.240. 1 hit.
    1.10.540.10. 1 hit.
    2.40.110.10. 1 hit.
    3.40.50.1000. 1 hit.
    InterProiIPR006091. Acyl-CoA_Oxase/DH_cen-dom.
    IPR009075. AcylCo_DH/oxidase_C.
    IPR013786. AcylCoA_DH/ox_N.
    IPR009100. AcylCoA_DH/oxidase_NM_dom.
    IPR002575. Aminoglycoside_PTrfase.
    IPR023214. HAD-like_dom.
    IPR006439. HAD-SF_hydro_IA.
    IPR011945. HAD-SF_ppase_IA/epoxid_hydro_N.
    IPR011009. Kinase-like_dom.
    IPR023198. PGP_dom2.
    [Graphical view]
    PfamiPF00441. Acyl-CoA_dh_1. 1 hit.
    PF02770. Acyl-CoA_dh_M. 1 hit.
    PF02771. Acyl-CoA_dh_N. 1 hit.
    PF01636. APH. 1 hit.
    PF13419. HAD_2. 1 hit.
    [Graphical view]
    PRINTSiPR00413. HADHALOGNASE.
    SUPFAMiSSF47203. SSF47203. 1 hit.
    SSF56112. SSF56112. 1 hit.
    SSF56645. SSF56645. 1 hit.
    SSF56784. SSF56784. 1 hit.
    TIGRFAMsiTIGR02247. HAD-1A3-hyp. 1 hit.
    TIGR01509. HAD-SF-IA-v3. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    B5DEF6-1 [UniParc]FASTAAdd to Basket

    « Hide

    MCIRRLFQPS SIHWAWRTTA PKHPLSRHQG IPRWTYSRGR SYRAVIFDMG     50
    GVLMPSPGTV AAGWEVQNHV PPGTIMKALI RGGDSGPWMR FMKGEMTMER 100
    FLEEFGRLCS EIAKTSVPVS SFFSLLTSEH VAKQFPVMTQ AVSQIRAEGL 150
    QTAVLTNNFL LSNGKSFLPL DRKQFDVVVE SCVEGVCKPD PRIFQLCLQR 200
    LNLQPSQAIF LDDLGPNVKV AASLGIRTIK VDNPETAVKE LEDLLGFPLH 250
    GGVPNTRPVR KTMEIPQDAL ETYLKGLLGT RYTGPMKLLQ FDHGQSNPTY 300
    YIRLADRQLV LRKKPPGTLL PSAHAIEREF RIMKALGDAG VPVPTVLDLC 350
    SDSSIIGTPF YLMEYCPGII YKDPSLPGLE PSRREAIYTA MNQVLCRIHS 400
    VDLQATGLDG FGKQGDYISR QVQTWTKQYR AAETSSIPAM ERLIQWLPLH 450
    LPQQQRTTVV HGDFRLDNLM FRPEKAEVLA VLDWELSTLG DPFADVAYSC 500
    LAHYLPSSFP MLRGFRDQDV RELGIPTVEE YFRMYCLNMG IPPIDNWNFY 550
    MAFSFFRVAA ILQGVYKRLL TGQASSATAG QSGKLTESMA ELAWDFAIKE 600
    GFRVFKAMPA TTTLTRSYHA WAGPRLPRTP TGSRSHSTTV AASPSHEAKG 650
    GLIISPEGLS PRVRKLYDQL LQFMEQKVYP VETELQRHQA SADRWSPSPL 700
    IEDLKEKAQA EGLWNLFLPL ETDPERKYGA GLTNVEYAHL CEVMGMSLYA 750
    SEIFNCSAPD TGNMEILVRY GTEEQKARWL APLLEGRIRS CFAMTEPQVA 800
    SSDASNIEAS IKEEDGSYVI NGHKWWISGI LDPRCKLCVF MGKTDPQAPR 850
    HQQQSMLLVP MDTPGIKVIR PLSVFGLEDP PGGHGEVQFK DVRVPKENIL 900
    LGPGRGFEIA QGRLGPGRIH HCMRLIGYSE RALELMKTRV MSRTAFGKPL 950
    VEHGTILADI ARSRVDIEQA RLLVLKAAHL MDVAGNKAAA LEIAMIKMVA 1000
    PSMAYRVIDR AVQAFGAAGL SSDYPLAQFF GWARALRFAD GPDEVHQLTV 1050
    AKMELKGRSR LQEPAAPRV 1069
    Length:1,069
    Mass (Da):119,270
    Last modified:October 14, 2008 - v1
    Checksum:iED8B9F3852F1166A
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    BC168650 mRNA. Translation: AAI68650.1.
    UniGeneiRn.13452.

    Genome annotation databases

    UCSCiRGD:1310159. rat.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    BC168650 mRNA. Translation: AAI68650.1 .
    UniGenei Rn.13452.

    3D structure databases

    ProteinModelPortali B5DEF6.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 10116.ENSRNOP00000054244.

    Proteomic databases

    PRIDEi B5DEF6.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    UCSCi RGD:1310159. rat.

    Organism-specific databases

    RGDi 1310159. Acad10.

    Phylogenomic databases

    eggNOGi COG1960.
    HOGENOMi HOG000131660.
    HOVERGENi HBG057142.
    PhylomeDBi B5DEF6.

    Miscellaneous databases

    NextBioi 35565131.

    Gene expression databases

    Genevestigatori B5DEF6.

    Family and domain databases

    Gene3Di 1.10.150.240. 1 hit.
    1.10.540.10. 1 hit.
    2.40.110.10. 1 hit.
    3.40.50.1000. 1 hit.
    InterProi IPR006091. Acyl-CoA_Oxase/DH_cen-dom.
    IPR009075. AcylCo_DH/oxidase_C.
    IPR013786. AcylCoA_DH/ox_N.
    IPR009100. AcylCoA_DH/oxidase_NM_dom.
    IPR002575. Aminoglycoside_PTrfase.
    IPR023214. HAD-like_dom.
    IPR006439. HAD-SF_hydro_IA.
    IPR011945. HAD-SF_ppase_IA/epoxid_hydro_N.
    IPR011009. Kinase-like_dom.
    IPR023198. PGP_dom2.
    [Graphical view ]
    Pfami PF00441. Acyl-CoA_dh_1. 1 hit.
    PF02770. Acyl-CoA_dh_M. 1 hit.
    PF02771. Acyl-CoA_dh_N. 1 hit.
    PF01636. APH. 1 hit.
    PF13419. HAD_2. 1 hit.
    [Graphical view ]
    PRINTSi PR00413. HADHALOGNASE.
    SUPFAMi SSF47203. SSF47203. 1 hit.
    SSF56112. SSF56112. 1 hit.
    SSF56645. SSF56645. 1 hit.
    SSF56784. SSF56784. 1 hit.
    TIGRFAMsi TIGR02247. HAD-1A3-hyp. 1 hit.
    TIGR01509. HAD-SF-IA-v3. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
      The MGC Project Team
      Gerhard D.S., Wagner L., Feingold E.A., Shenmen C.M., Grouse L.H., Schuler G., Klein S.L., Old S., Rasooly R., Good P., Guyer M., Peck A.M., Derge J.G., Lipman D., Collins F.S., Jang W., Sherry S., Feolo M.
      , Misquitta L., Lee E., Rotmistrovsky K., Greenhut S.F., Schaefer C.F., Buetow K., Bonner T.I., Haussler D., Kent J., Kiekhaus M., Furey T., Brent M., Prange C., Schreiber K., Shapiro N., Bhat N.K., Hopkins R.F., Hsie F., Driscoll T., Soares M.B., Casavant T.L., Scheetz T.E., Brown-stein M.J., Usdin T.B., Toshiyuki S., Carninci P., Piao Y., Dudekula D.B., Ko M.S., Kawakami K., Suzuki Y., Sugano S., Gruber C.E., Smith M.R., Simmons B., Moore T., Waterman R., Johnson S.L., Ruan Y., Wei C.L., Mathavan S., Gunaratne P.H., Wu J., Garcia A.M., Hulyk S.W., Fuh E., Yuan Y., Sneed A., Kowis C., Hodgson A., Muzny D.M., McPherson J., Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., Sanchez A., Whiting M., Madari A., Young A.C., Wetherby K.D., Granite S.J., Kwong P.N., Brinkley C.P., Pearson R.L., Bouffard G.G., Blakesly R.W., Green E.D., Dickson M.C., Rodriguez A.C., Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Griffith M., Griffith O.L., Krzywinski M.I., Liao N., Morin R., Morrin R., Palmquist D., Petrescu A.S., Skalska U., Smailus D.E., Stott J.M., Schnerch A., Schein J.E., Jones S.J., Holt R.A., Baross A., Marra M.A., Clifton S., Makowski K.A., Bosak S., Malek J.
      Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
      Tissue: LungImported.

    Entry informationi

    Entry nameiB5DEF6_RAT
    AccessioniPrimary (citable) accession number: B5DEF6
    Entry historyi
    Integrated into UniProtKB/TrEMBL: October 14, 2008
    Last sequence update: October 14, 2008
    Last modified: October 1, 2014
    This is version 40 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)