B5DEF6 (B5DEF6_RAT) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
RGD1310159 protein EMBL AAI68650.1

Gene names

Name:	Acad10 RGD 1310159
Synonyms:	RGD1310159 RGD 1310159

Organism

Rattus norvegicus (Rat) EMBL AAI68650.1

Taxonomic identifier

10116 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Opisthokonta › Metazoa › Eumetazoa › Bilateria › Deuterostomia › Chordata › Craniata › Vertebrata › Gnathostomata › Teleostomi › Euteleostomi › Sarcopterygii › Tetrapoda › Amniota › Mammalia › Theria › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Rattus

Protein attributes

Sequence length	1069 AA.
Sequence status	Complete.
Protein existence	Evidence at transcript level

General annotation (Comments)

Sequence similarities

Belongs to the acyl-CoA dehydrogenase family. RuleBase RU004309

Ontologies

Gene Ontology (GO)
Molecular_function	acyl-CoA dehydrogenase activity Inferred from electronic annotation. Source: InterPro flavin adenine dinucleotide binding Inferred from electronic annotation. Source: InterPro hydrolase activity Inferred from electronic annotation. Source: InterPro transferase activity, transferring phosphorus-containing groups Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	B5DEF6 [UniParc]. Last modified October 14, 2008. Version 1. Checksum: ED8B9F3852F1166A	FASTA	1,069	119,270
	10 20 30 40 50 60 MCIRRLFQPS SIHWAWRTTA PKHPLSRHQG IPRWTYSRGR SYRAVIFDMG GVLMPSPGTV 70 80 90 100 110 120 AAGWEVQNHV PPGTIMKALI RGGDSGPWMR FMKGEMTMER FLEEFGRLCS EIAKTSVPVS 130 140 150 160 170 180 SFFSLLTSEH VAKQFPVMTQ AVSQIRAEGL QTAVLTNNFL LSNGKSFLPL DRKQFDVVVE 190 200 210 220 230 240 SCVEGVCKPD PRIFQLCLQR LNLQPSQAIF LDDLGPNVKV AASLGIRTIK VDNPETAVKE 250 260 270 280 290 300 LEDLLGFPLH GGVPNTRPVR KTMEIPQDAL ETYLKGLLGT RYTGPMKLLQ FDHGQSNPTY 310 320 330 340 350 360 YIRLADRQLV LRKKPPGTLL PSAHAIEREF RIMKALGDAG VPVPTVLDLC SDSSIIGTPF 370 380 390 400 410 420 YLMEYCPGII YKDPSLPGLE PSRREAIYTA MNQVLCRIHS VDLQATGLDG FGKQGDYISR 430 440 450 460 470 480 QVQTWTKQYR AAETSSIPAM ERLIQWLPLH LPQQQRTTVV HGDFRLDNLM FRPEKAEVLA 490 500 510 520 530 540 VLDWELSTLG DPFADVAYSC LAHYLPSSFP MLRGFRDQDV RELGIPTVEE YFRMYCLNMG 550 560 570 580 590 600 IPPIDNWNFY MAFSFFRVAA ILQGVYKRLL TGQASSATAG QSGKLTESMA ELAWDFAIKE 610 620 630 640 650 660 GFRVFKAMPA TTTLTRSYHA WAGPRLPRTP TGSRSHSTTV AASPSHEAKG GLIISPEGLS 670 680 690 700 710 720 PRVRKLYDQL LQFMEQKVYP VETELQRHQA SADRWSPSPL IEDLKEKAQA EGLWNLFLPL 730 740 750 760 770 780 ETDPERKYGA GLTNVEYAHL CEVMGMSLYA SEIFNCSAPD TGNMEILVRY GTEEQKARWL 790 800 810 820 830 840 APLLEGRIRS CFAMTEPQVA SSDASNIEAS IKEEDGSYVI NGHKWWISGI LDPRCKLCVF 850 860 870 880 890 900 MGKTDPQAPR HQQQSMLLVP MDTPGIKVIR PLSVFGLEDP PGGHGEVQFK DVRVPKENIL 910 920 930 940 950 960 LGPGRGFEIA QGRLGPGRIH HCMRLIGYSE RALELMKTRV MSRTAFGKPL VEHGTILADI 970 980 990 1000 1010 1020 ARSRVDIEQA RLLVLKAAHL MDVAGNKAAA LEIAMIKMVA PSMAYRVIDR AVQAFGAAGL 1030 1040 1050 1060 SSDYPLAQFF GWARALRFAD GPDEVHQLTV AKMELKGRSR LQEPAAPRV

References

[1]

"The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Gerhard D.S., Wagner L., Feingold E.A., Shenmen C.M., Grouse L.H., Schuler G., Klein S.L., Old S., Rasooly R., Good P., Guyer M., Peck A.M., Derge J.G., Lipman D., Collins F.S., Jang W., Sherry S., Feolo M. , Misquitta L., Lee E., Rotmistrovsky K., Greenhut S.F., Schaefer C.F., Buetow K., Bonner T.I., Haussler D., Kent J., Kiekhaus M., Furey T., Brent M., Prange C., Schreiber K., Shapiro N., Bhat N.K., Hopkins R.F., Hsie F., Driscoll T., Soares M.B., Casavant T.L., Scheetz T.E., Brown-stein M.J., Usdin T.B., Toshiyuki S., Carninci P., Piao Y., Dudekula D.B., Ko M.S., Kawakami K., Suzuki Y., Sugano S., Gruber C.E., Smith M.R., Simmons B., Moore T., Waterman R., Johnson S.L., Ruan Y., Wei C.L., Mathavan S., Gunaratne P.H., Wu J., Garcia A.M., Hulyk S.W., Fuh E., Yuan Y., Sneed A., Kowis C., Hodgson A., Muzny D.M., McPherson J., Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., Sanchez A., Whiting M., Madari A., Young A.C., Wetherby K.D., Granite S.J., Kwong P.N., Brinkley C.P., Pearson R.L., Bouffard G.G., Blakesly R.W., Green E.D., Dickson M.C., Rodriguez A.C., Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Griffith M., Griffith O.L., Krzywinski M.I., Liao N., Morin R., Morrin R., Palmquist D., Petrescu A.S., Skalska U., Smailus D.E., Stott J.M., Schnerch A., Schein J.E., Jones S.J., Holt R.A., Baross A., Marra M.A., Clifton S., Makowski K.A., Bosak S., Malek J. Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. Tissue: Lung EMBL AAI68650.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	BC168650 mRNA. Translation: AAI68650.1.
IPI	IPI00911371.
UniGene	Rn.13452.
3D structure databases
ProteinModelPortal	B5DEF6.
ModBase	Search...
Protein-protein interaction databases
STRING	10116.ENSRNOP00000054244. B5DEF6.
Proteomic databases
PRIDE	B5DEF6.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
UCSC	RGD:1310159. rat.
Phylogenomic databases
eggNOG	COG1960.
HOGENOM	HOG000131660.
HOVERGEN	HBG057142.
OrthoDB	EOG42RD6H.
Gene expression databases
Genevestigator	B5DEF6.
Family and domain databases
Gene3D	1.10.150.240. 1 hit. 1.10.540.10. 1 hit. 2.40.110.10. 1 hit. 3.40.50.1000. 1 hit.
InterPro	IPR006092. Acyl-CoA_DH_N. IPR006090. Acyl-CoA_Oxase/DH_1. IPR006091. Acyl-CoA_Oxase/DH_cen-dom. IPR009075. AcylCo_DH/oxidase_C. IPR013786. AcylCoA_DH/ox_N. IPR009100. AcylCoA_DH/oxidase. IPR002575. Aminoglycoside_PTrfase. IPR023214. HAD-like_dom. IPR006402. HAD-SF_hydro_IA_v3. IPR011945. HAD-SF_ppase_IA/epoxid_hydro_N. IPR005833. Haloacid_DH/epoxide_hydro. IPR011009. Kinase-like_dom. IPR023198. PGP_dom2. [Graphical view]
Pfam	PF00441. Acyl-CoA_dh_1. 1 hit. PF02770. Acyl-CoA_dh_M. 1 hit. PF02771. Acyl-CoA_dh_N. 1 hit. PF01636. APH. 1 hit. PF13419. HAD_2. 1 hit. [Graphical view]
PRINTS	PR00413. HADHALOGNASE.
SUPFAM	SSF56645. AcylCoA_dehyd_NM. 1 hit. SSF47203. AcylCoADH_C_like. 1 hit. SSF56784. HAD-like_dom. 1 hit. SSF56112. Kinase_like. 1 hit.
TIGRFAMs	TIGR02247. HAD-1A3-hyp. 1 hit. TIGR01509. HAD-SF-IA-v3. 1 hit.
ProtoNet	Search...
Other
NextBio	35565131.

Entry information

Entry name

B5DEF6_RAT

Accession

Primary (citable) accession number: B5DEF6

Entry history

Integrated into UniProtKB/TrEMBL:	October 14, 2008
Last sequence update:	October 14, 2008
Last modified:	May 1, 2013
This is version 31 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)