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B5DEF6 (B5DEF6_RAT) Unreviewed, UniProtKB/TrEMBL

Last modified July 9, 2014. Version 39. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Name:Acad10 RGD 1310159
Synonyms:RGD1310159 EMBL AAI68650.1 RGD 1310159
OrganismRattus norvegicus (Rat) EMBL AAI68650.1
Taxonomic identifier10116 [NCBI]
Taxonomic lineageEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus

Protein attributes

Sequence length1069 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

General annotation (Comments)

Sequence similarities

Belongs to the acyl-CoA dehydrogenase family. RuleBase RU004309

Sequences

Sequence LengthMass (Da)Tools
B5DEF6 [UniParc].

Last modified October 14, 2008. Version 1.
Checksum: ED8B9F3852F1166A

FASTA1,069119,270
        10         20         30         40         50         60 
MCIRRLFQPS SIHWAWRTTA PKHPLSRHQG IPRWTYSRGR SYRAVIFDMG GVLMPSPGTV 

        70         80         90        100        110        120 
AAGWEVQNHV PPGTIMKALI RGGDSGPWMR FMKGEMTMER FLEEFGRLCS EIAKTSVPVS 

       130        140        150        160        170        180 
SFFSLLTSEH VAKQFPVMTQ AVSQIRAEGL QTAVLTNNFL LSNGKSFLPL DRKQFDVVVE 

       190        200        210        220        230        240 
SCVEGVCKPD PRIFQLCLQR LNLQPSQAIF LDDLGPNVKV AASLGIRTIK VDNPETAVKE 

       250        260        270        280        290        300 
LEDLLGFPLH GGVPNTRPVR KTMEIPQDAL ETYLKGLLGT RYTGPMKLLQ FDHGQSNPTY 

       310        320        330        340        350        360 
YIRLADRQLV LRKKPPGTLL PSAHAIEREF RIMKALGDAG VPVPTVLDLC SDSSIIGTPF 

       370        380        390        400        410        420 
YLMEYCPGII YKDPSLPGLE PSRREAIYTA MNQVLCRIHS VDLQATGLDG FGKQGDYISR 

       430        440        450        460        470        480 
QVQTWTKQYR AAETSSIPAM ERLIQWLPLH LPQQQRTTVV HGDFRLDNLM FRPEKAEVLA 

       490        500        510        520        530        540 
VLDWELSTLG DPFADVAYSC LAHYLPSSFP MLRGFRDQDV RELGIPTVEE YFRMYCLNMG 

       550        560        570        580        590        600 
IPPIDNWNFY MAFSFFRVAA ILQGVYKRLL TGQASSATAG QSGKLTESMA ELAWDFAIKE 

       610        620        630        640        650        660 
GFRVFKAMPA TTTLTRSYHA WAGPRLPRTP TGSRSHSTTV AASPSHEAKG GLIISPEGLS 

       670        680        690        700        710        720 
PRVRKLYDQL LQFMEQKVYP VETELQRHQA SADRWSPSPL IEDLKEKAQA EGLWNLFLPL 

       730        740        750        760        770        780 
ETDPERKYGA GLTNVEYAHL CEVMGMSLYA SEIFNCSAPD TGNMEILVRY GTEEQKARWL 

       790        800        810        820        830        840 
APLLEGRIRS CFAMTEPQVA SSDASNIEAS IKEEDGSYVI NGHKWWISGI LDPRCKLCVF 

       850        860        870        880        890        900 
MGKTDPQAPR HQQQSMLLVP MDTPGIKVIR PLSVFGLEDP PGGHGEVQFK DVRVPKENIL 

       910        920        930        940        950        960 
LGPGRGFEIA QGRLGPGRIH HCMRLIGYSE RALELMKTRV MSRTAFGKPL VEHGTILADI 

       970        980        990       1000       1010       1020 
ARSRVDIEQA RLLVLKAAHL MDVAGNKAAA LEIAMIKMVA PSMAYRVIDR AVQAFGAAGL 

      1030       1040       1050       1060 
SSDYPLAQFF GWARALRFAD GPDEVHQLTV AKMELKGRSR LQEPAAPRV 

« Hide

References

[1]"The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
The MGC Project Team
Gerhard D.S., Wagner L., Feingold E.A., Shenmen C.M., Grouse L.H., Schuler G., Klein S.L., Old S., Rasooly R., Good P., Guyer M., Peck A.M., Derge J.G., Lipman D., Collins F.S., Jang W., Sherry S., Feolo M. expand/collapse author list , Misquitta L., Lee E., Rotmistrovsky K., Greenhut S.F., Schaefer C.F., Buetow K., Bonner T.I., Haussler D., Kent J., Kiekhaus M., Furey T., Brent M., Prange C., Schreiber K., Shapiro N., Bhat N.K., Hopkins R.F., Hsie F., Driscoll T., Soares M.B., Casavant T.L., Scheetz T.E., Brown-stein M.J., Usdin T.B., Toshiyuki S., Carninci P., Piao Y., Dudekula D.B., Ko M.S., Kawakami K., Suzuki Y., Sugano S., Gruber C.E., Smith M.R., Simmons B., Moore T., Waterman R., Johnson S.L., Ruan Y., Wei C.L., Mathavan S., Gunaratne P.H., Wu J., Garcia A.M., Hulyk S.W., Fuh E., Yuan Y., Sneed A., Kowis C., Hodgson A., Muzny D.M., McPherson J., Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., Sanchez A., Whiting M., Madari A., Young A.C., Wetherby K.D., Granite S.J., Kwong P.N., Brinkley C.P., Pearson R.L., Bouffard G.G., Blakesly R.W., Green E.D., Dickson M.C., Rodriguez A.C., Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Griffith M., Griffith O.L., Krzywinski M.I., Liao N., Morin R., Morrin R., Palmquist D., Petrescu A.S., Skalska U., Smailus D.E., Stott J.M., Schnerch A., Schein J.E., Jones S.J., Holt R.A., Baross A., Marra M.A., Clifton S., Makowski K.A., Bosak S., Malek J.
Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Tissue: Lung EMBL AAI68650.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
BC168650 mRNA. Translation: AAI68650.1.
UniGeneRn.13452.

3D structure databases

ProteinModelPortalB5DEF6.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING10116.ENSRNOP00000054244.

Proteomic databases

PRIDEB5DEF6.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

UCSCRGD:1310159. rat.

Organism-specific databases

RGD1310159. Acad10.

Phylogenomic databases

eggNOGCOG1960.
HOGENOMHOG000131660.
HOVERGENHBG057142.
PhylomeDBB5DEF6.

Gene expression databases

GenevestigatorB5DEF6.

Family and domain databases

Gene3D1.10.150.240. 1 hit.
1.10.540.10. 1 hit.
2.40.110.10. 1 hit.
3.40.50.1000. 1 hit.
InterProIPR006091. Acyl-CoA_Oxase/DH_cen-dom.
IPR009075. AcylCo_DH/oxidase_C.
IPR013786. AcylCoA_DH/ox_N.
IPR009100. AcylCoA_DH/oxidase_NM_dom.
IPR002575. Aminoglycoside_PTrfase.
IPR023214. HAD-like_dom.
IPR006439. HAD-SF_hydro_IA.
IPR011945. HAD-SF_ppase_IA/epoxid_hydro_N.
IPR011009. Kinase-like_dom.
IPR023198. PGP_dom2.
[Graphical view]
PfamPF00441. Acyl-CoA_dh_1. 1 hit.
PF02770. Acyl-CoA_dh_M. 1 hit.
PF02771. Acyl-CoA_dh_N. 1 hit.
PF01636. APH. 1 hit.
PF13419. HAD_2. 1 hit.
[Graphical view]
PRINTSPR00413. HADHALOGNASE.
SUPFAMSSF47203. SSF47203. 1 hit.
SSF56112. SSF56112. 1 hit.
SSF56645. SSF56645. 1 hit.
SSF56784. SSF56784. 1 hit.
TIGRFAMsTIGR02247. HAD-1A3-hyp. 1 hit.
TIGR01509. HAD-SF-IA-v3. 1 hit.
ProtoNetSearch...

Other

NextBio35565131.

Entry information

Entry nameB5DEF6_RAT
AccessionPrimary (citable) accession number: B5DEF6
Entry history
Integrated into UniProtKB/TrEMBL: October 14, 2008
Last sequence update: October 14, 2008
Last modified: July 9, 2014
This is version 39 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)