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B5DEF6

- B5DEF6_RAT

UniProt

B5DEF6 - B5DEF6_RAT

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Protein
Submitted name:

RGD1310159 protein

Gene

Acad10

Organism
Rattus norvegicus (Rat)
Status
Unreviewed - Annotation score: 1 out of 5- Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

  1. acyl-CoA dehydrogenase activity Source: InterPro
  2. flavin adenine dinucleotide binding Source: InterPro
  3. hydrolase activity Source: InterPro
  4. transferase activity, transferring phosphorus-containing groups Source: InterPro
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
RGD1310159 proteinImported
Gene namesi
Name:Acad10Imported
Synonyms:RGD1310159Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus

Organism-specific databases

RGDi1310159. Acad10.

PTM / Processingi

Proteomic databases

PRIDEiB5DEF6.

Expressioni

Gene expression databases

GenevestigatoriB5DEF6.

Interactioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000054244.

Structurei

3D structure databases

ProteinModelPortaliB5DEF6.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the acyl-CoA dehydrogenase family.UniRule annotation

Phylogenomic databases

eggNOGiCOG1960.
HOGENOMiHOG000131660.
HOVERGENiHBG057142.
PhylomeDBiB5DEF6.

Family and domain databases

Gene3Di1.10.150.240. 1 hit.
1.10.540.10. 1 hit.
2.40.110.10. 1 hit.
3.40.50.1000. 1 hit.
InterProiIPR006091. Acyl-CoA_Oxase/DH_cen-dom.
IPR009075. AcylCo_DH/oxidase_C.
IPR013786. AcylCoA_DH/ox_N.
IPR009100. AcylCoA_DH/oxidase_NM_dom.
IPR002575. Aminoglycoside_PTrfase.
IPR023214. HAD-like_dom.
IPR006439. HAD-SF_hydro_IA.
IPR011945. HAD-SF_ppase_IA/epoxid_hydro_N.
IPR011009. Kinase-like_dom.
IPR023198. PGP_dom2.
[Graphical view]
PfamiPF00441. Acyl-CoA_dh_1. 1 hit.
PF02770. Acyl-CoA_dh_M. 1 hit.
PF02771. Acyl-CoA_dh_N. 1 hit.
PF01636. APH. 1 hit.
PF13419. HAD_2. 1 hit.
[Graphical view]
PRINTSiPR00413. HADHALOGNASE.
SUPFAMiSSF47203. SSF47203. 1 hit.
SSF56112. SSF56112. 1 hit.
SSF56645. SSF56645. 1 hit.
SSF56784. SSF56784. 1 hit.
TIGRFAMsiTIGR02247. HAD-1A3-hyp. 1 hit.
TIGR01509. HAD-SF-IA-v3. 1 hit.

Sequencei

Sequence statusi: Complete.

B5DEF6-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MCIRRLFQPS SIHWAWRTTA PKHPLSRHQG IPRWTYSRGR SYRAVIFDMG
60 70 80 90 100
GVLMPSPGTV AAGWEVQNHV PPGTIMKALI RGGDSGPWMR FMKGEMTMER
110 120 130 140 150
FLEEFGRLCS EIAKTSVPVS SFFSLLTSEH VAKQFPVMTQ AVSQIRAEGL
160 170 180 190 200
QTAVLTNNFL LSNGKSFLPL DRKQFDVVVE SCVEGVCKPD PRIFQLCLQR
210 220 230 240 250
LNLQPSQAIF LDDLGPNVKV AASLGIRTIK VDNPETAVKE LEDLLGFPLH
260 270 280 290 300
GGVPNTRPVR KTMEIPQDAL ETYLKGLLGT RYTGPMKLLQ FDHGQSNPTY
310 320 330 340 350
YIRLADRQLV LRKKPPGTLL PSAHAIEREF RIMKALGDAG VPVPTVLDLC
360 370 380 390 400
SDSSIIGTPF YLMEYCPGII YKDPSLPGLE PSRREAIYTA MNQVLCRIHS
410 420 430 440 450
VDLQATGLDG FGKQGDYISR QVQTWTKQYR AAETSSIPAM ERLIQWLPLH
460 470 480 490 500
LPQQQRTTVV HGDFRLDNLM FRPEKAEVLA VLDWELSTLG DPFADVAYSC
510 520 530 540 550
LAHYLPSSFP MLRGFRDQDV RELGIPTVEE YFRMYCLNMG IPPIDNWNFY
560 570 580 590 600
MAFSFFRVAA ILQGVYKRLL TGQASSATAG QSGKLTESMA ELAWDFAIKE
610 620 630 640 650
GFRVFKAMPA TTTLTRSYHA WAGPRLPRTP TGSRSHSTTV AASPSHEAKG
660 670 680 690 700
GLIISPEGLS PRVRKLYDQL LQFMEQKVYP VETELQRHQA SADRWSPSPL
710 720 730 740 750
IEDLKEKAQA EGLWNLFLPL ETDPERKYGA GLTNVEYAHL CEVMGMSLYA
760 770 780 790 800
SEIFNCSAPD TGNMEILVRY GTEEQKARWL APLLEGRIRS CFAMTEPQVA
810 820 830 840 850
SSDASNIEAS IKEEDGSYVI NGHKWWISGI LDPRCKLCVF MGKTDPQAPR
860 870 880 890 900
HQQQSMLLVP MDTPGIKVIR PLSVFGLEDP PGGHGEVQFK DVRVPKENIL
910 920 930 940 950
LGPGRGFEIA QGRLGPGRIH HCMRLIGYSE RALELMKTRV MSRTAFGKPL
960 970 980 990 1000
VEHGTILADI ARSRVDIEQA RLLVLKAAHL MDVAGNKAAA LEIAMIKMVA
1010 1020 1030 1040 1050
PSMAYRVIDR AVQAFGAAGL SSDYPLAQFF GWARALRFAD GPDEVHQLTV
1060
AKMELKGRSR LQEPAAPRV
Length:1,069
Mass (Da):119,270
Last modified:October 14, 2008 - v1
Checksum:iED8B9F3852F1166A
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
BC168650 mRNA. Translation: AAI68650.1.
UniGeneiRn.13452.

Genome annotation databases

UCSCiRGD:1310159. rat.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
BC168650 mRNA. Translation: AAI68650.1 .
UniGenei Rn.13452.

3D structure databases

ProteinModelPortali B5DEF6.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 10116.ENSRNOP00000054244.

Proteomic databases

PRIDEi B5DEF6.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

UCSCi RGD:1310159. rat.

Organism-specific databases

RGDi 1310159. Acad10.

Phylogenomic databases

eggNOGi COG1960.
HOGENOMi HOG000131660.
HOVERGENi HBG057142.
PhylomeDBi B5DEF6.

Miscellaneous databases

NextBioi 35565131.

Gene expression databases

Genevestigatori B5DEF6.

Family and domain databases

Gene3Di 1.10.150.240. 1 hit.
1.10.540.10. 1 hit.
2.40.110.10. 1 hit.
3.40.50.1000. 1 hit.
InterProi IPR006091. Acyl-CoA_Oxase/DH_cen-dom.
IPR009075. AcylCo_DH/oxidase_C.
IPR013786. AcylCoA_DH/ox_N.
IPR009100. AcylCoA_DH/oxidase_NM_dom.
IPR002575. Aminoglycoside_PTrfase.
IPR023214. HAD-like_dom.
IPR006439. HAD-SF_hydro_IA.
IPR011945. HAD-SF_ppase_IA/epoxid_hydro_N.
IPR011009. Kinase-like_dom.
IPR023198. PGP_dom2.
[Graphical view ]
Pfami PF00441. Acyl-CoA_dh_1. 1 hit.
PF02770. Acyl-CoA_dh_M. 1 hit.
PF02771. Acyl-CoA_dh_N. 1 hit.
PF01636. APH. 1 hit.
PF13419. HAD_2. 1 hit.
[Graphical view ]
PRINTSi PR00413. HADHALOGNASE.
SUPFAMi SSF47203. SSF47203. 1 hit.
SSF56112. SSF56112. 1 hit.
SSF56645. SSF56645. 1 hit.
SSF56784. SSF56784. 1 hit.
TIGRFAMsi TIGR02247. HAD-1A3-hyp. 1 hit.
TIGR01509. HAD-SF-IA-v3. 1 hit.
ProtoNeti Search...

Publicationsi

  1. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Gerhard D.S., Wagner L., Feingold E.A., Shenmen C.M., Grouse L.H., Schuler G., Klein S.L., Old S., Rasooly R., Good P., Guyer M., Peck A.M., Derge J.G., Lipman D., Collins F.S., Jang W., Sherry S., Feolo M.
    , Misquitta L., Lee E., Rotmistrovsky K., Greenhut S.F., Schaefer C.F., Buetow K., Bonner T.I., Haussler D., Kent J., Kiekhaus M., Furey T., Brent M., Prange C., Schreiber K., Shapiro N., Bhat N.K., Hopkins R.F., Hsie F., Driscoll T., Soares M.B., Casavant T.L., Scheetz T.E., Brown-stein M.J., Usdin T.B., Toshiyuki S., Carninci P., Piao Y., Dudekula D.B., Ko M.S., Kawakami K., Suzuki Y., Sugano S., Gruber C.E., Smith M.R., Simmons B., Moore T., Waterman R., Johnson S.L., Ruan Y., Wei C.L., Mathavan S., Gunaratne P.H., Wu J., Garcia A.M., Hulyk S.W., Fuh E., Yuan Y., Sneed A., Kowis C., Hodgson A., Muzny D.M., McPherson J., Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., Sanchez A., Whiting M., Madari A., Young A.C., Wetherby K.D., Granite S.J., Kwong P.N., Brinkley C.P., Pearson R.L., Bouffard G.G., Blakesly R.W., Green E.D., Dickson M.C., Rodriguez A.C., Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Griffith M., Griffith O.L., Krzywinski M.I., Liao N., Morin R., Morrin R., Palmquist D., Petrescu A.S., Skalska U., Smailus D.E., Stott J.M., Schnerch A., Schein J.E., Jones S.J., Holt R.A., Baross A., Marra M.A., Clifton S., Makowski K.A., Bosak S., Malek J.
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: LungImported.

Entry informationi

Entry nameiB5DEF6_RAT
AccessioniPrimary (citable) accession number: B5DEF6
Entry historyi
Integrated into UniProtKB/TrEMBL: October 14, 2008
Last sequence update: October 14, 2008
Last modified: October 1, 2014
This is version 40 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)