B5DDP2 (B5DDP2_DANRE) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Irf11 protein EMBL AAI65272.1

Gene names

Name:	irf1b ZFIN ZDB-GENE-041114-13
Synonyms:	irf11 ZFIN ZDB-GENE-041114-13

Organism

Danio rerio (Zebrafish) (Brachydanio rerio) EMBL AAI65272.1

Taxonomic identifier

7955 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Opisthokonta › Metazoa › Eumetazoa › Bilateria › Deuterostomia › Chordata › Craniata › Vertebrata › Gnathostomata › Teleostomi › Euteleostomi › Actinopterygii › Actinopteri › Neopterygii › Teleostei › Elopocephala › Clupeocephala › Otocephala › Ostariophysi › Otophysi › Cypriniphysi › Cypriniformes › Cyprinoidea › Cyprinidae › Danio

Protein attributes

Sequence length	287 AA.
Sequence status	Complete.
Protein existence	Evidence at transcript level

Ontologies

Gene Ontology (GO)
Molecular_function	regulatory region DNA binding Inferred from electronic annotation. Source: InterPro sequence-specific DNA binding transcription factor activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	B5DDP2 [UniParc]. Last modified October 14, 2008. Version 1. Checksum: 05418CC66B4E01D1	FASTA	287	32,957
	10 20 30 40 50 60 MPVSRMRMRP WLESRIDSNT INGLMWVNKE EKMFSIPWKH AARHGWEVDK DDCLFKQWAI 70 80 90 100 110 120 HTGKYKEGVT QPDPKTWKAN FRCAMNSLPD IEEVKDKSIN KGCGAVRVYR MLPAVSKKIK 130 140 150 160 170 180 RSKSRDSRRR MKSLSQKVKL EDMSSEDTSA EMTQENTIDS TQSTPHTSSP TVGYEVEIGP 190 200 210 220 230 240 DSTCNDIYSR FQVSPVHSTD LEDSEAILEL TRQLERDSSQ WLQNFGKGFL ANEVCTTESL 250 260 270 280 SPESQWSVSS GEELELRLYT ELTPDLRTDS YTYTELWNSS SMPQSIC

References

[1]	NIH - Zebrafish Gene Collection (ZGC) project Submitted (APR-2008) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. Tissue: PCR rescue EMBL AAI65272.1.
+	Additional computationally mapped references.

Cross-references

Sequence databases
EMBL GenBank DDBJ	BC165272 mRNA. Translation: AAI65272.1.
IPI	IPI00502553.
UniGene	Dr.119956.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Organism-specific databases
ZFIN	ZDB-GENE-041114-13. irf1b.
Phylogenomic databases
eggNOG	NOG42582.
HOGENOM	HOG000037937.
HOVERGEN	HBG003455.
OrthoDB	EOG4JWVDV.
Family and domain databases
Gene3D	1.10.10.10. 1 hit.
InterPro	IPR017431. Interferon_reg_fac-1/2. IPR019817. Interferon_reg_fac_CS. IPR001346. Interferon_reg_fact_DNA-bd_dom. IPR011991. WHTH_DNA-bd_dom. [Graphical view]
Pfam	PF00605. IRF. 1 hit. [Graphical view]
PIRSF	PIRSF038196. IFN_RF1/2. 1 hit.
PRINTS	PR00267. INTFRNREGFCT.
SMART	SM00348. IRF. 1 hit. [Graphical view]
PROSITE	PS00601. IRF_1. 1 hit. PS51507. IRF_2. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

B5DDP2_DANRE

Accession

Primary (citable) accession number: B5DDP2

Entry history

Integrated into UniProtKB/TrEMBL:	October 14, 2008
Last sequence update:	October 14, 2008
Last modified:	May 1, 2013
This is version 30 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)