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B5BJG9 (RHAR_SALPK) Reviewed, UniProtKB/Swiss-Prot

Last modified May 14, 2014. Version 53. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
HTH-type transcriptional activator RhaR
Alternative name(s):
L-rhamnose operon transcriptional activator RhaR
Gene names
Name:rhaR
Ordered Locus Names:SSPA3620
OrganismSalmonella paratyphi A (strain AKU_12601) [Complete proteome] [HAMAP]
Taxonomic identifier554290 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeSalmonella

Protein attributes

Sequence length282 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Activates expression of the rhaSR operon in response to L-rhamnose By similarity. HAMAP-Rule MF_01533

Subunit structure

Binds DNA as a dimer By similarity. HAMAP-Rule MF_01533

Subcellular location

Cytoplasm By similarity HAMAP-Rule MF_01533.

Sequence similarities

Contains 2 HTH araC/xylS-type DNA-binding domains.

Ontologies

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 282282HTH-type transcriptional activator RhaR HAMAP-Rule MF_01533
PRO_1000200943

Regions

DNA binding195 – 21420H-T-H motif By similarity
DNA binding244 – 26724H-T-H motif By similarity

Sites

Site2461Interaction with sigma-70 By similarity

Sequences

Sequence LengthMass (Da)Tools
B5BJG9 [UniParc].

Last modified September 23, 2008. Version 1.
Checksum: 657BF8FE7DE1CF20

FASTA28232,858
        10         20         30         40         50         60 
MANQLILLKK DFFTDEQQAV TVADRYPQDV FAEHTHEFCE LVMVWRGNGL HVLNERPYRI 

        70         80         90        100        110        120 
TRGDLFYIRA EDKHSYTSVN DLVLQNIIYC PERLKLNVNW QAMIPGFQGA QWHPHWRLGS 

       130        140        150        160        170        180 
MGMNQARQVI NQLEHESNGR DPLANEMAEL LFGQLVMTLK RHRYATDDLP ATSRETLLDK 

       190        200        210        220        230        240 
LITALANSLE CPFALDAFCQ QEQCSERVLR QQFRAQTGMT INQYLRQVRI CHAQYLLQHS 

       250        260        270        280 
PLMISEISMQ CGFEDSNYFS VVFTRETGMT PSQWRHLSNQ SD 

« Hide

References

[1]"Pseudogene accumulation in the evolutionary histories of Salmonella enterica serovars Paratyphi A and Typhi."
Holt K.E., Thomson N.R., Wain J., Langridge G.C., Hasan R., Bhutta Z.A., Quail M.A., Norbertczak H., Walker D., Simmonds M., White B., Bason N., Mungall K., Dougan G., Parkhill J.
BMC Genomics 10:36-36(2009) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: AKU_12601.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
FM200053 Genomic DNA. Translation: CAR61902.1.
RefSeqYP_002144461.1. NC_011147.1.

3D structure databases

ProteinModelPortalB5BJG9.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING554290.SSPA3620.

Protein family/group databases

AraC-XylSSearch...

Proteomic databases

PRIDEB5BJG9.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaCAR61902; CAR61902; SSPA3620.
PATRIC32347932. VBISalEnt134303_4139.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG2207.
HOGENOMHOG000290513.
OMALQTEDYF.
OrthoDBEOG6Z3KH4.

Enzyme and pathway databases

BioCycSENT554290:GJDA-3899-MONOMER.

Family and domain databases

Gene3D1.10.10.60. 2 hits.
2.60.120.280. 1 hit.
HAMAPMF_01533. HTH_type_RhaR.
InterProIPR003313. AraC-bd.
IPR009057. Homeodomain-like.
IPR018060. HTH_AraC.
IPR018062. HTH_AraC-typ_CS.
IPR011051. RmlC_Cupin.
IPR023699. Tscrpt_act_RhaR.
IPR020449. Tscrpt_reg_HTH_AraC-type.
[Graphical view]
PfamPF02311. AraC_binding. 1 hit.
PF12833. HTH_18. 1 hit.
[Graphical view]
PRINTSPR00032. HTHARAC.
SMARTSM00342. HTH_ARAC. 1 hit.
[Graphical view]
SUPFAMSSF46689. SSF46689. 1 hit.
SSF51182. SSF51182. 1 hit.
PROSITEPS00041. HTH_ARAC_FAMILY_1. 1 hit.
PS01124. HTH_ARAC_FAMILY_2. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameRHAR_SALPK
AccessionPrimary (citable) accession number: B5BJG9
Entry history
Integrated into UniProtKB/Swiss-Prot: April 14, 2009
Last sequence update: September 23, 2008
Last modified: May 14, 2014
This is version 53 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families