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B4YK21

- B4YK21_9BURK

UniProt

B4YK21 - B4YK21_9BURK

Protein
Submitted name:

TumC

Gene

tumC

Organism
Advenella mimigardefordensis
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 28 (01 Oct 2014)
      Sequence version 1 (23 Sep 2008)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. damaged DNA binding Source: InterPro
    2. DNA-directed DNA polymerase activity Source: InterPro

    GO - Biological processi

    1. DNA repair Source: UniProtKB-KW

    Keywords - Biological processi

    DNA damage, DNA repairUniRule annotation

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    TumCImported
    Gene namesi
    Name:tumCImported
    Encoded oniPlasmid pBTK445Imported
    OrganismiAdvenella mimigardefordensisImported
    Taxonomic identifieri302406 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesAlcaligenaceae

    Family & Domainsi

    Sequence similaritiesi

    Contains umuC domain.SAAS annotation

    Family and domain databases

    InterProiIPR017961. DNA_pol_Y-fam_little_finger.
    IPR001126. DNA_repair_prot_UmuC-like.
    IPR017963. DNA_repair_prot_UmuC-like_N.
    IPR025188. DUF4113.
    IPR024728. PolY_HhH_motif.
    [Graphical view]
    PfamiPF13438. DUF4113. 1 hit.
    PF00817. IMS. 1 hit.
    PF11799. IMS_C. 1 hit.
    PF11798. IMS_HHH. 1 hit.
    [Graphical view]
    PROSITEiPS50173. UMUC. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    B4YK21-1 [UniParc]FASTAAdd to Basket

    « Hide

    MDDLGRCYAR YQGYAMTYGL IDGNCFYCSC ERVFRPFLKG KALISLSNND    50
    GCVISRTDEA KAMGIKMGQP WFEIKHLEEK GLMALSSNFA LYGDMSDRMM 100
    SVISRFSPRQ EIYSIDESFA DFSGITEDLS AYSQKIRAAV LRETGIPTCV 150
    GIGATKTLAK LANHIAKKQP SWSGVCDLTQ LDRYQLADIM KNIEVGEVWG 200
    IGRRIAKRLN ELGIYTVFDL ARMKPEAARA EFSIVVGKTV QELRGISRID 250
    LEEVADPKKQ IISSRSFGLP MTDLAGLQSA LSEFVAIACN KLRGQNSVAA 300
    SMQIFIRTSP FDKGKQYGNS RLVTPPYPTA DNLVFTKHAL KALDAIWRPG 350
    FKYKKAGVML MDISPADAVQ GELFPVEPEH GKRAQLMVAL DGINARYGRG 400
    SVKTGSIGFH DREHWYMRQE RKSQGYTTNW DEVLIARA 438
    Length:438
    Mass (Da):48,860
    Last modified:September 23, 2008 - v1
    Checksum:i355267C6F03D9F96
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    EU585932 Genomic DNA. Translation: ACD43618.1.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    EU585932 Genomic DNA. Translation: ACD43618.1 .

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Family and domain databases

    InterProi IPR017961. DNA_pol_Y-fam_little_finger.
    IPR001126. DNA_repair_prot_UmuC-like.
    IPR017963. DNA_repair_prot_UmuC-like_N.
    IPR025188. DUF4113.
    IPR024728. PolY_HhH_motif.
    [Graphical view ]
    Pfami PF13438. DUF4113. 1 hit.
    PF00817. IMS. 1 hit.
    PF11799. IMS_C. 1 hit.
    PF11798. IMS_HHH. 1 hit.
    [Graphical view ]
    PROSITEi PS50173. UMUC. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Conjugative Type 4 secretion system of a novel large plasmid from the chemoautotroph Tetrathiobacter kashmirensis and construction of shuttle vectors for Alcaligenaceae."
      Dam B., Ghosh W., Das Gupta S.K.
      Appl. Environ. Microbiol. 75:4362-4373(2009) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: WGTImported.
      Plasmid: pBTK445

    Entry informationi

    Entry nameiB4YK21_9BURK
    AccessioniPrimary (citable) accession number: B4YK21
    Entry historyi
    Integrated into UniProtKB/TrEMBL: September 23, 2008
    Last sequence update: September 23, 2008
    Last modified: October 1, 2014
    This is version 28 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    PlasmidImported

    External Data

    Dasty 3