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B4YK21 (B4YK21_9BURK) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 27. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Name:tumC EMBL ACD43618.1
Encoded onPlasmid pBTK445 Ref.1 EMBL ACD43618.1
OrganismAdvenella mimigardefordensis EMBL ACD43618.1
Taxonomic identifier302406 [NCBI]
Taxonomic lineageBacteriaProteobacteriaBetaproteobacteriaBurkholderialesAlcaligenaceae

Protein attributes

Sequence length438 AA.
Sequence statusComplete.
Protein existencePredicted

General annotation (Comments)

Sequence similarities

Contains umuC domain. SAAS SAAS017963

Ontologies

Keywords
   Biological processDNA damage
DNA repair RuleBase RU003987
   Technical termPlasmid EMBL ACD43618.1
Gene Ontology (GO)
   Biological_processDNA repair

Inferred from electronic annotation. Source: UniProtKB-KW

   Molecular_functionDNA-directed DNA polymerase activity

Inferred from electronic annotation. Source: InterPro

damaged DNA binding

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
B4YK21 [UniParc].

Last modified September 23, 2008. Version 1.
Checksum: 355267C6F03D9F96

FASTA43848,860
        10         20         30         40         50         60 
MDDLGRCYAR YQGYAMTYGL IDGNCFYCSC ERVFRPFLKG KALISLSNND GCVISRTDEA 

        70         80         90        100        110        120 
KAMGIKMGQP WFEIKHLEEK GLMALSSNFA LYGDMSDRMM SVISRFSPRQ EIYSIDESFA 

       130        140        150        160        170        180 
DFSGITEDLS AYSQKIRAAV LRETGIPTCV GIGATKTLAK LANHIAKKQP SWSGVCDLTQ 

       190        200        210        220        230        240 
LDRYQLADIM KNIEVGEVWG IGRRIAKRLN ELGIYTVFDL ARMKPEAARA EFSIVVGKTV 

       250        260        270        280        290        300 
QELRGISRID LEEVADPKKQ IISSRSFGLP MTDLAGLQSA LSEFVAIACN KLRGQNSVAA 

       310        320        330        340        350        360 
SMQIFIRTSP FDKGKQYGNS RLVTPPYPTA DNLVFTKHAL KALDAIWRPG FKYKKAGVML 

       370        380        390        400        410        420 
MDISPADAVQ GELFPVEPEH GKRAQLMVAL DGINARYGRG SVKTGSIGFH DREHWYMRQE 

       430 
RKSQGYTTNW DEVLIARA 

« Hide

References

[1]"Conjugative Type 4 secretion system of a novel large plasmid from the chemoautotroph Tetrathiobacter kashmirensis and construction of shuttle vectors for Alcaligenaceae."
Dam B., Ghosh W., Das Gupta S.K.
Appl. Environ. Microbiol. 75:4362-4373(2009) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: WGT EMBL ACD43618.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
EU585932 Genomic DNA. Translation: ACD43618.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Family and domain databases

InterProIPR017961. DNA_pol_Y-fam_little_finger.
IPR001126. DNA_repair_prot_UmuC-like.
IPR017963. DNA_repair_prot_UmuC-like_N.
IPR025188. DUF4113.
IPR024728. PolY_HhH_motif.
[Graphical view]
PfamPF13438. DUF4113. 1 hit.
PF00817. IMS. 1 hit.
PF11799. IMS_C. 1 hit.
PF11798. IMS_HHH. 1 hit.
[Graphical view]
PROSITEPS50173. UMUC. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameB4YK21_9BURK
AccessionPrimary (citable) accession number: B4YK21
Entry history
Integrated into UniProtKB/TrEMBL: September 23, 2008
Last sequence update: September 23, 2008
Last modified: April 16, 2014
This is version 27 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)