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Protein
Submitted name:

TumC

Gene

tumC

Organism
Advenella mimigardefordensis
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. damaged DNA binding Source: InterPro
  2. DNA-directed DNA polymerase activity Source: InterPro

GO - Biological processi

  1. DNA repair Source: UniProtKB-KW
Complete GO annotation...

Keywords - Biological processi

DNA damage, DNA repairUniRule annotation

Names & Taxonomyi

Protein namesi
Submitted name:
TumCImported
Gene namesi
Name:tumCImported
Encoded oniPlasmid pBTK445Imported
OrganismiAdvenella mimigardefordensisImported
Taxonomic identifieri302406 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesAlcaligenaceae

Family & Domainsi

Sequence similaritiesi

Contains umuC domain.SAAS annotation

Family and domain databases

InterProiIPR017961. DNA_pol_Y-fam_little_finger.
IPR001126. DNA_repair_prot_UmuC-like.
IPR017963. DNA_repair_prot_UmuC-like_N.
IPR025188. DUF4113.
IPR024728. PolY_HhH_motif.
[Graphical view]
PfamiPF13438. DUF4113. 1 hit.
PF00817. IMS. 1 hit.
PF11799. IMS_C. 1 hit.
PF11798. IMS_HHH. 1 hit.
[Graphical view]
PROSITEiPS50173. UMUC. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B4YK21-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MDDLGRCYAR YQGYAMTYGL IDGNCFYCSC ERVFRPFLKG KALISLSNND
60 70 80 90 100
GCVISRTDEA KAMGIKMGQP WFEIKHLEEK GLMALSSNFA LYGDMSDRMM
110 120 130 140 150
SVISRFSPRQ EIYSIDESFA DFSGITEDLS AYSQKIRAAV LRETGIPTCV
160 170 180 190 200
GIGATKTLAK LANHIAKKQP SWSGVCDLTQ LDRYQLADIM KNIEVGEVWG
210 220 230 240 250
IGRRIAKRLN ELGIYTVFDL ARMKPEAARA EFSIVVGKTV QELRGISRID
260 270 280 290 300
LEEVADPKKQ IISSRSFGLP MTDLAGLQSA LSEFVAIACN KLRGQNSVAA
310 320 330 340 350
SMQIFIRTSP FDKGKQYGNS RLVTPPYPTA DNLVFTKHAL KALDAIWRPG
360 370 380 390 400
FKYKKAGVML MDISPADAVQ GELFPVEPEH GKRAQLMVAL DGINARYGRG
410 420 430
SVKTGSIGFH DREHWYMRQE RKSQGYTTNW DEVLIARA
Length:438
Mass (Da):48,860
Last modified:September 23, 2008 - v1
Checksum:i355267C6F03D9F96
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
EU585932 Genomic DNA. Translation: ACD43618.1.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
EU585932 Genomic DNA. Translation: ACD43618.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Family and domain databases

InterProiIPR017961. DNA_pol_Y-fam_little_finger.
IPR001126. DNA_repair_prot_UmuC-like.
IPR017963. DNA_repair_prot_UmuC-like_N.
IPR025188. DUF4113.
IPR024728. PolY_HhH_motif.
[Graphical view]
PfamiPF13438. DUF4113. 1 hit.
PF00817. IMS. 1 hit.
PF11799. IMS_C. 1 hit.
PF11798. IMS_HHH. 1 hit.
[Graphical view]
PROSITEiPS50173. UMUC. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Conjugative Type 4 secretion system of a novel large plasmid from the chemoautotroph Tetrathiobacter kashmirensis and construction of shuttle vectors for Alcaligenaceae."
    Dam B., Ghosh W., Das Gupta S.K.
    Appl. Environ. Microbiol. 75:4362-4373(2009) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: WGTImported.
    Plasmid: pBTK445

Entry informationi

Entry nameiB4YK21_9BURK
AccessioniPrimary (citable) accession number: B4YK21
Entry historyi
Integrated into UniProtKB/TrEMBL: September 23, 2008
Last sequence update: September 23, 2008
Last modified: October 1, 2014
This is version 28 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

PlasmidImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.