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Protein
Submitted name:

DNA ligase D

Gene

AnaeK_0832

Organism
Anaeromyxobacter sp. (strain K)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciASP447217:GHB0-838-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligase DImported
Gene namesi
Ordered Locus Names:AnaeK_0832Imported
OrganismiAnaeromyxobacter sp. (strain K)Imported
Taxonomic identifieri447217 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaDeltaproteobacteriaMyxococcalesCystobacterineaeAnaeromyxobacteraceaeAnaeromyxobacter
ProteomesiUP000001871 Componenti: Chromosome

Structurei

3D structure databases

ProteinModelPortaliB4UEC1.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiRYAPHVE.
OrthoDBiEOG661H49.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. LigD_ligase_dom.
IPR014145. LigD_pol_dom.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B4UEC1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPARPAGARR GRRLPRHAGG GELSRVARAP VPTYRAQLAT LVAAPPAGGG
60 70 80 90 100
WVHETKYDGY RIGCALEGGR ATLWSRRGND WTAQFPEVAR AAEALPARSA
110 120 130 140 150
LLDGEVAAVL PGGRTSFQAL QQAFSGGRRS LAYFVFDLLW LDGEDLSGRP
160 170 180 190 200
LRERKDALRR LLGARGAVLR YAPHVEAPGA EVLREACRLG LEGIVSKRAD
210 220 230 240 250
APYRPGRNTT WTKAKCLARQ ELVIGGFTDP EGSRQGIGAL LVGFHEGGAL
260 270 280 290 300
RFAGKVGTGF TQASARALRA RLDRLERADP PFTPRPPGAL GRIAHWVRPE
310 320 330 340 350
LVAEVAFTEW TDDGKVRHPS FQGLREDKRA ADVVREVPGA GAPPAPPAPP
360 370 380 390 400
APAPAPTAAG RARRRAAAGA AGEVVIGGVR LSHPERTMFP GEGRAALTKA
410 420 430 440 450
DVARYYDAVA GAMVPHLRGR PLTLFHCPEG ITGACRFMKH SKTWAPPAVR
460 470 480 490 500
RIRIQEKTKV GEYLIADDRA ALLALVQMDV LELHTWNSTV EALEQPDRIV
510 520 530 540 550
LDLDPGPEVP WREVVRAARL LRSALEALGL AAFVKTTGGA GLHVVTPLVP
560 570 580 590 600
RRRWEDCLAF ARGLAATVAR HEPRAFTVAF ARAGRERRIL LDYLRNNRTN
610 620 630 640 650
TSVAAFSLRA RPGAPASVPV AWDELGPRLR PERLDARTVP RRLARLGADP
660 670 680
WAGWARAARP LGDAHLAAVG AAPVDEPARG GGRR
Length:684
Mass (Da):73,699
Last modified:September 23, 2008 - v1
Checksum:iEEB4B0465C23988E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001131 Genomic DNA. Translation: ACG72068.1.
RefSeqiWP_012524895.1. NC_011145.1.

Genome annotation databases

EnsemblBacteriaiACG72068; ACG72068; AnaeK_0832.
KEGGiank:AnaeK_0832.
PATRICi20936262. VBIAnaSp90767_0846.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001131 Genomic DNA. Translation: ACG72068.1.
RefSeqiWP_012524895.1. NC_011145.1.

3D structure databases

ProteinModelPortaliB4UEC1.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACG72068; ACG72068; AnaeK_0832.
KEGGiank:AnaeK_0832.
PATRICi20936262. VBIAnaSp90767_0846.

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiRYAPHVE.
OrthoDBiEOG661H49.

Enzyme and pathway databases

BioCyciASP447217:GHB0-838-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. LigD_ligase_dom.
IPR014145. LigD_pol_dom.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: KImported.

Entry informationi

Entry nameiB4UEC1_ANASK
AccessioniPrimary (citable) accession number: B4UEC1
Entry historyi
Integrated into UniProtKB/TrEMBL: September 23, 2008
Last sequence update: September 23, 2008
Last modified: July 22, 2015
This is version 46 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.