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Protein
Submitted name:

DNA ligase D, 3'-phosphoesterase domain protein

Gene

HY04AAS1_0647

Organism
Hydrogenobaculum sp. (strain Y04AAS1)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ligase activity Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciHSP380749:GH30-669-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligase D, 3'-phosphoesterase domain proteinImported
Gene namesi
Ordered Locus Names:HY04AAS1_0647Imported
OrganismiHydrogenobaculum sp. (strain Y04AAS1)Imported
Taxonomic identifieri380749 [NCBI]
Taxonomic lineageiBacteriaAquificaeAquificalesAquificaceaeHydrogenobaculum
ProteomesiUP000001872: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi380749.HY04AAS1_0647.

Family & Domainsi

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000046158.
OMAiHASHLHW.
OrthoDBiEOG661H49.

Family and domain databases

InterProiIPR014144. LigD_PE_domain.
[Graphical view]
PfamiPF13298. LigD_N. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.

Sequencei

Sequence statusi: Complete.

B4U873-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSDYSKKRDF SKTPEPRWSV IESHESIFVI QEHHASHLHW DFRLALDGVL
60 70 80 90 100
KSWAIPKEPP IESGVKRLAI QTEDHPLEYA NFEGVIPEGQ YGAGVVKIWD
110 120 130 140
KGTFELLERT DKKYDFILNG NKLKGKYHLI KFPKGGDNAW LFFKSD
Length:146
Mass (Da):16,914
Last modified:September 23, 2008 - v1
Checksum:iB440BB4221825743
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001130 Genomic DNA. Translation: ACG57334.1.
RefSeqiWP_012513690.1. NC_011126.1.
YP_002121312.1. NC_011126.1.

Genome annotation databases

EnsemblBacteriaiACG57334; ACG57334; HY04AAS1_0647.
GeneIDi6743447.
KEGGihya:HY04AAS1_0647.
PATRICi22135950. VBIHydSp64203_0649.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001130 Genomic DNA. Translation: ACG57334.1.
RefSeqiWP_012513690.1. NC_011126.1.
YP_002121312.1. NC_011126.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi380749.HY04AAS1_0647.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACG57334; ACG57334; HY04AAS1_0647.
GeneIDi6743447.
KEGGihya:HY04AAS1_0647.
PATRICi22135950. VBIHydSp64203_0649.

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000046158.
OMAiHASHLHW.
OrthoDBiEOG661H49.

Enzyme and pathway databases

BioCyciHSP380749:GH30-669-MONOMER.

Family and domain databases

InterProiIPR014144. LigD_PE_domain.
[Graphical view]
PfamiPF13298. LigD_N. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Y04AAS1Imported.

Entry informationi

Entry nameiB4U873_HYDS0
AccessioniPrimary (citable) accession number: B4U873
Entry historyi
Integrated into UniProtKB/TrEMBL: September 23, 2008
Last sequence update: September 23, 2008
Last modified: March 4, 2015
This is version 36 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.