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Protein

HTH-type transcriptional activator RhaS

Gene

rhaS

Organism
Salmonella schwarzengrund (strain CVM19633)
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

Activates expression of the rhaBAD and rhaT operons.UniRule annotation

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi190 – 209H-T-H motifUniRule annotationAdd BLAST20
DNA bindingi239 – 262H-T-H motifUniRule annotationAdd BLAST24

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionActivator, DNA-binding
Biological processRhamnose metabolism, Transcription, Transcription regulation

Names & Taxonomyi

Protein namesi
Recommended name:
HTH-type transcriptional activator RhaSUniRule annotation
Alternative name(s):
L-rhamnose operon regulatory protein RhaSUniRule annotation
Gene namesi
Name:rhaSUniRule annotation
Ordered Locus Names:SeSA_A4262
OrganismiSalmonella schwarzengrund (strain CVM19633)
Taxonomic identifieri439843 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeSalmonella
Proteomesi
  • UP000001865 Componenti: Chromosome

Subcellular locationi

  • Cytoplasm UniRule annotation

GO - Cellular componenti

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_10002009651 – 278HTH-type transcriptional activator RhaSAdd BLAST278

Interactioni

Subunit structurei

Binds DNA as a dimer.UniRule annotation

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sitei241Interaction with sigma-70UniRule annotation1
Sitei250Interaction with sigma-70UniRule annotation1

Structurei

3D structure databases

SMRiB4TPQ9
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Keywords - Domaini

Repeat

Phylogenomic databases

HOGENOMiHOG000290513
KOiK02855
OMAiGHYPSHW

Family and domain databases

Gene3Di2.60.120.101 hit
HAMAPiMF_01534 HTH_type_RhaS, 1 hit
InterProiView protein in InterPro
IPR003313 AraC-bd
IPR009057 Homeobox-like_sf
IPR037923 HTH-like
IPR018060 HTH_AraC
IPR018062 HTH_AraC-typ_CS
IPR014710 RmlC-like_jellyroll
IPR020449 Tscrpt_reg_HTH_AraC-type
IPR023609 Tscrpt_reg_HTH_RhaS
PfamiView protein in Pfam
PF02311 AraC_binding, 1 hit
PF12833 HTH_18, 1 hit
PRINTSiPR00032 HTHARAC
SMARTiView protein in SMART
SM00342 HTH_ARAC, 1 hit
SUPFAMiSSF46689 SSF46689, 2 hits
SSF51215 SSF51215, 1 hit
PROSITEiView protein in PROSITE
PS00041 HTH_ARAC_FAMILY_1, 1 hit
PS01124 HTH_ARAC_FAMILY_2, 1 hit

Sequencei

Sequence statusi: Complete.

B4TPQ9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTVLHSVDFF PSGKAPVAIE PRLPQAAFPE HHHDFHEIVI VEHGTGIHVF
60 70 80 90 100
NGQPYTISGG TVCFVRDHDR HLYEHTDNLC LTNVLWRSPD AFQFLAGLDQ
110 120 130 140 150
LLPQEQDGYY PSHWRVNQSV LQQVRQLVGL MERAGDSMDA PAVANREILF
160 170 180 190 200
MQLLVLLRRS SLMEGATNND AKLNQLMAWL EEHFAEEVCW EAVAEQFSLS
210 220 230 240 250
LRTLHRQLKQ HTGLTPQRYL NRLRLIKARH LLRHSDHSVT EIAYRCGFGD
260 270
SNHFSTLFRR EFNWSPRDIR QGRDAIIQ
Length:278
Mass (Da):32,133
Last modified:September 23, 2008 - v1
Checksum:iC32FAA43CC6576F6
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001127 Genomic DNA Translation: ACF91573.1
RefSeqiWP_000217116.1, NC_011094.1

Genome annotation databases

EnsemblBacteriaiACF91573; ACF91573; SeSA_A4262
KEGGisew:SeSA_A4262

Similar proteinsi

Entry informationi

Entry nameiRHAS_SALSV
AccessioniPrimary (citable) accession number: B4TPQ9
Entry historyiIntegrated into UniProtKB/Swiss-Prot: April 14, 2009
Last sequence update: September 23, 2008
Last modified: April 25, 2018
This is version 72 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome