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Protein

HTH-type transcriptional regulator YidZ

Gene

yidZ

Organism
Salmonella schwarzengrund (strain CVM19633)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Involved in anaerobic NO protection.UniRule annotation

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
DNA bindingi25 – 4420H-T-H motifUniRule annotationAdd
BLAST

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding

Enzyme and pathway databases

BioCyciSENT439843:GHHR-4160-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
HTH-type transcriptional regulator YidZUniRule annotation
Gene namesi
Name:yidZUniRule annotation
Ordered Locus Names:SeSA_A4057
OrganismiSalmonella schwarzengrund (strain CVM19633)
Taxonomic identifieri439843 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeSalmonella
Proteomesi
  • UP000001865 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 319319HTH-type transcriptional regulator YidZPRO_1000148203Add
BLAST

Structurei

3D structure databases

ProteinModelPortaliB4TN13.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini8 – 6558HTH lysR-typeUniRule annotationAdd
BLAST

Sequence similaritiesi

Contains 1 HTH lysR-type DNA-binding domain.UniRule annotation

Phylogenomic databases

HOGENOMiHOG000103694.
OMAiLDKPHHE.
OrthoDBiEOG60GRSH.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
HAMAPiMF_01607. HTH_type_YidZ.
InterProiIPR005119. LysR_subst-bd.
IPR000847. Tscrpt_reg_HTH_LysR.
IPR023746. Tscrpt_reg_YidZ.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00126. HTH_1. 1 hit.
PF03466. LysR_substrate. 1 hit.
[Graphical view]
SUPFAMiSSF46785. SSF46785. 1 hit.
PROSITEiPS50931. HTH_LYSR. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B4TN13-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKKSLTNLDL NLLLCLQLLM QERSVTKAAK RMNVTPSAVS KSLAKLRAWF
60 70 80 90 100
DDPLFVNTPL GLAPTPLMVS MEQSLADWMQ MGNQLLDKPH HQTPRGLKFE
110 120 130 140 150
LAAESPLMMI MFNSLSQQIY QRYPQATIKV RNWDYDSLEA ITRGEVDIGF
160 170 180 190 200
TGRESHPRSR ELLSLLPLAI DFEVLFSDLP WVWLREDHPA LREAWDLDTF
210 220 230 240 250
LRYPHISICW EQSDTWALDD VLQEMGRKRH IALSLPGFEQ SLFMAAQPDH
260 270 280 290 300
TLIATAPRYC QHYNQLHQLP LVARPLPFDA QQREKLMVPF TLLWHKRNSH
310
NPKIVWLRQA INTLCRRLI
Length:319
Mass (Da):37,084
Last modified:September 23, 2008 - v1
Checksum:i0561FC1DB7459B6E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001127 Genomic DNA. Translation: ACF92654.1.
RefSeqiWP_000749365.1. NC_011094.1.

Genome annotation databases

EnsemblBacteriaiACF92654; ACF92654; SeSA_A4057.
KEGGisew:SeSA_A4057.
PATRICi32376691. VBISalEnt87589_4051.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001127 Genomic DNA. Translation: ACF92654.1.
RefSeqiWP_000749365.1. NC_011094.1.

3D structure databases

ProteinModelPortaliB4TN13.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACF92654; ACF92654; SeSA_A4057.
KEGGisew:SeSA_A4057.
PATRICi32376691. VBISalEnt87589_4051.

Phylogenomic databases

HOGENOMiHOG000103694.
OMAiLDKPHHE.
OrthoDBiEOG60GRSH.

Enzyme and pathway databases

BioCyciSENT439843:GHHR-4160-MONOMER.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
HAMAPiMF_01607. HTH_type_YidZ.
InterProiIPR005119. LysR_subst-bd.
IPR000847. Tscrpt_reg_HTH_LysR.
IPR023746. Tscrpt_reg_YidZ.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00126. HTH_1. 1 hit.
PF03466. LysR_substrate. 1 hit.
[Graphical view]
SUPFAMiSSF46785. SSF46785. 1 hit.
PROSITEiPS50931. HTH_LYSR. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Comparative genomics of 28 Salmonella enterica isolates: evidence for CRISPR-mediated adaptive sublineage evolution."
    Fricke W.F., Mammel M.K., McDermott P.F., Tartera C., White D.G., Leclerc J.E., Ravel J., Cebula T.A.
    J. Bacteriol. 193:3556-3568(2011) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: CVM19633.

Entry informationi

Entry nameiYIDZ_SALSV
AccessioniPrimary (citable) accession number: B4TN13
Entry historyi
Integrated into UniProtKB/Swiss-Prot: April 14, 2009
Last sequence update: September 23, 2008
Last modified: December 9, 2015
This is version 49 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.