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B4TH02

- DEOD_SALHS

UniProt

B4TH02 - DEOD_SALHS

Protein

Purine nucleoside phosphorylase DeoD-type

Gene

deoD

Organism
Salmonella heidelberg (strain SL476)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 40 (01 Oct 2014)
      Sequence version 1 (23 Sep 2008)
      Previous versions | rss
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    Functioni

    Catalytic activityi

    Purine nucleoside + phosphate = purine + alpha-D-ribose 1-phosphate.UniRule annotation
    Purine deoxynucleoside + phosphate = purine + 2'-deoxy-alpha-D-ribose 1-phosphate.UniRule annotation

    GO - Molecular functioni

    1. purine-nucleoside phosphorylase activity Source: UniProtKB-HAMAP

    GO - Biological processi

    1. purine nucleoside metabolic process Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    Glycosyltransferase, Transferase

    Enzyme and pathway databases

    BioCyciSENT454169:GHYG-4945-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Purine nucleoside phosphorylase DeoD-typeUniRule annotation (EC:2.4.2.1UniRule annotation)
    Short name:
    PNPUniRule annotation
    Gene namesi
    Name:deoDUniRule annotation
    Ordered Locus Names:SeHA_C4978
    OrganismiSalmonella heidelberg (strain SL476)
    Taxonomic identifieri454169 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeSalmonella
    ProteomesiUP000001866: Chromosome

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 239239Purine nucleoside phosphorylase DeoD-typePRO_1000186218Add
    BLAST

    Proteomic databases

    PRIDEiB4TH02.

    Interactioni

    Subunit structurei

    Homohexamer.UniRule annotation

    Protein-protein interaction databases

    STRINGi454169.SeHA_C4978.

    Structurei

    3D structure databases

    ProteinModelPortaliB4TH02.
    SMRiB4TH02. Positions 2-238.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the PNP/UDP phosphorylase family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG0813.
    HOGENOMiHOG000274896.
    OMAiRQTTFSE.
    OrthoDBiEOG6BKJC5.

    Family and domain databases

    Gene3Di3.40.50.1580. 1 hit.
    HAMAPiMF_01627. Pur_nucleosid_phosp.
    InterProiIPR004402. DeoD-type.
    IPR018017. Nucleoside_phosphorylase.
    IPR018016. Nucleoside_phosphorylase_CS.
    IPR000845. Nucleoside_phosphorylase_d.
    [Graphical view]
    PANTHERiPTHR21234. PTHR21234. 1 hit.
    PfamiPF01048. PNP_UDP_1. 1 hit.
    [Graphical view]
    SUPFAMiSSF53167. SSF53167. 1 hit.
    TIGRFAMsiTIGR00107. deoD. 1 hit.
    PROSITEiPS01232. PNP_UDP_1. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    B4TH02-1 [UniParc]FASTAAdd to Basket

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    MATPHINAEM GDFADVVLMP GDPLRAKHIA ETFLENVREV NNVRGMLGFT    50
    GTYKGRKISV MGHGMGIPSC SIYTKELITD FGVKKIIRVG SCGAVRMDVK 100
    LRDVVIGMGA CTDSKVNRIR FKDHDFAAIA DFDMVRNAVD AAKALGVDAR 150
    VGNLFSADLF YSPDGEMFDV MEKYGVLGVE MEAAGIYGVA AEFGAKALTI 200
    CTVSDHIRTH EQTTAAERQT TFNDMIKIAL ESVLLGDKE 239
    Length:239
    Mass (Da):25,978
    Last modified:September 23, 2008 - v1
    Checksum:i90ED901A61814796
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001120 Genomic DNA. Translation: ACF70391.1.
    RefSeqiYP_002048590.1. NC_011083.1.

    Genome annotation databases

    EnsemblBacteriaiACF70391; ACF70391; SeHA_C4978.
    PATRICi18517318. VBISalEnt43179_4692.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001120 Genomic DNA. Translation: ACF70391.1 .
    RefSeqi YP_002048590.1. NC_011083.1.

    3D structure databases

    ProteinModelPortali B4TH02.
    SMRi B4TH02. Positions 2-238.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 454169.SeHA_C4978.

    Proteomic databases

    PRIDEi B4TH02.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ACF70391 ; ACF70391 ; SeHA_C4978 .
    PATRICi 18517318. VBISalEnt43179_4692.

    Phylogenomic databases

    eggNOGi COG0813.
    HOGENOMi HOG000274896.
    OMAi RQTTFSE.
    OrthoDBi EOG6BKJC5.

    Enzyme and pathway databases

    BioCyci SENT454169:GHYG-4945-MONOMER.

    Family and domain databases

    Gene3Di 3.40.50.1580. 1 hit.
    HAMAPi MF_01627. Pur_nucleosid_phosp.
    InterProi IPR004402. DeoD-type.
    IPR018017. Nucleoside_phosphorylase.
    IPR018016. Nucleoside_phosphorylase_CS.
    IPR000845. Nucleoside_phosphorylase_d.
    [Graphical view ]
    PANTHERi PTHR21234. PTHR21234. 1 hit.
    Pfami PF01048. PNP_UDP_1. 1 hit.
    [Graphical view ]
    SUPFAMi SSF53167. SSF53167. 1 hit.
    TIGRFAMsi TIGR00107. deoD. 1 hit.
    PROSITEi PS01232. PNP_UDP_1. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Comparative genomics of 28 Salmonella enterica isolates: evidence for CRISPR-mediated adaptive sublineage evolution."
      Fricke W.F., Mammel M.K., McDermott P.F., Tartera C., White D.G., Leclerc J.E., Ravel J., Cebula T.A.
      J. Bacteriol. 193:3556-3568(2011) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: SL476.

    Entry informationi

    Entry nameiDEOD_SALHS
    AccessioniPrimary (citable) accession number: B4TH02
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: July 28, 2009
    Last sequence update: September 23, 2008
    Last modified: October 1, 2014
    This is version 40 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome

    Documents

    1. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3