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Protein
Submitted name:

[Ni/Fe] hydrogenase, large subunit

Gene

SNSL254_A1650

Organism
Salmonella newport (strain SL254)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

  1. ferredoxin hydrogenase activity Source: InterPro
  2. nickel cation binding Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

OxidoreductaseUniRule annotation

Keywords - Ligandi

Metal-bindingUniRule annotation, NickelUniRule annotation

Enzyme and pathway databases

BioCyciSENT423368:GHJB-1637-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
[Ni/Fe] hydrogenase, large subunitImported
Gene namesi
Ordered Locus Names:SNSL254_A1650Imported
OrganismiSalmonella newport (strain SL254)Imported
Taxonomic identifieri423368 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeSalmonella
ProteomesiUP000008824 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi423368.SNSL254_A1650.

Family & Domainsi

Sequence similaritiesi

Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0374.
HOGENOMiHOG000278799.
OMAiIVQVHTI.
OrthoDBiEOG6M9DSB.

Family and domain databases

Gene3Di1.10.645.10. 2 hits.
InterProiIPR001501. Ni-dep_hyd_lsu.
IPR018194. Ni-dep_hyd_lsu_Ni_BS.
IPR029014. NiFe_Hase-like.
[Graphical view]
PfamiPF00374. NiFeSe_Hases. 1 hit.
[Graphical view]
SUPFAMiSSF56762. SSF56762. 1 hit.
PROSITEiPS00507. NI_HGENASE_L_1. 1 hit.
PS00508. NI_HGENASE_L_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B4T5S9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAYPYQTQGF TLDNSGRRIV VDPVTRIEGH MRCEVNIDSN NVITNAVSTG
60 70 80 90 100
TMWRGLEVIL KGRDPRDAWA FVERICGVCT GTHALTSIRA VENALGIAIP
110 120 130 140 150
DNANCIRNMM QATLHVHDHL VHFYHLHALD WVDVVAALKA DPHQTSAIAQ
160 170 180 190 200
SLSAWPLSSP GYFRDLQNRL KRFIESGQLG PFRNGYWGHP AMKLPPEANL
210 220 230 240 250
LAVAHYLEAL DFQKEIVKIH TVFGGKNPHP NWLVGGVPCA INLDETGAVG
260 270 280 290 300
AVNMERLNLV SSIIQKARQF CEQVYLPDVL LIASYYKDWA KIGGGLSSMN
310 320 330 340 350
LLAYGEFPDN PNDYSASNLL LPRGAIINGR FDEIHPVDLT APDEIQEFVT
360 370 380 390 400
HSWYTYGNGN NDKGLHPWDG LTEPQLVMGE HYKGTKTFIE QVDESAKYSW
410 420 430 440 450
IKSPRWKGHA MEVGPLARYL IGYHQNKPEF KEPVDQLLSV LKLPKEALFS
460 470 480 490 500
TLGRTAARAL ESVWAGNTLQ YFFDRLMRNL KSGDTATANV TLWEPDTWPT
510 520 530 540 550
SAKGVGFSEA PRGALGHWIK IENQKIDSYQ CVVPTTWNAG PRDDKGQIGA
560 570 580 590 600
YEAALMGTKL AVPDQPLEIL RTLHSFDPCL ACSTHVIDNH GGELVRVQVR
Length:600
Mass (Da):66,805
Last modified:September 23, 2008 - v1
Checksum:i734A9E1916B387A7
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001113 Genomic DNA. Translation: ACF63186.1.
RefSeqiYP_002040787.1. NC_011080.1.

Genome annotation databases

EnsemblBacteriaiACF63186; ACF63186; SNSL254_A1650.
PATRICi18521722. VBISalEnt114557_1760.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001113 Genomic DNA. Translation: ACF63186.1.
RefSeqiYP_002040787.1. NC_011080.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi423368.SNSL254_A1650.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACF63186; ACF63186; SNSL254_A1650.
PATRICi18521722. VBISalEnt114557_1760.

Phylogenomic databases

eggNOGiCOG0374.
HOGENOMiHOG000278799.
OMAiIVQVHTI.
OrthoDBiEOG6M9DSB.

Enzyme and pathway databases

BioCyciSENT423368:GHJB-1637-MONOMER.

Family and domain databases

Gene3Di1.10.645.10. 2 hits.
InterProiIPR001501. Ni-dep_hyd_lsu.
IPR018194. Ni-dep_hyd_lsu_Ni_BS.
IPR029014. NiFe_Hase-like.
[Graphical view]
PfamiPF00374. NiFeSe_Hases. 1 hit.
[Graphical view]
SUPFAMiSSF56762. SSF56762. 1 hit.
PROSITEiPS00507. NI_HGENASE_L_1. 1 hit.
PS00508. NI_HGENASE_L_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Comparative genomics of 28 Salmonella enterica isolates: evidence for CRISPR-mediated adaptive sublineage evolution."
    Fricke W.F., Mammel M.K., McDermott P.F., Tartera C., White D.G., Leclerc J.E., Ravel J., Cebula T.A.
    J. Bacteriol. 193:3556-3568(2010) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: SL254Imported.

Entry informationi

Entry nameiB4T5S9_SALNS
AccessioniPrimary (citable) accession number: B4T5S9
Entry historyi
Integrated into UniProtKB/TrEMBL: September 23, 2008
Last sequence update: September 23, 2008
Last modified: March 4, 2015
This is version 44 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.