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Protein

Ribulokinase

Gene

araB

Organism
Salmonella newport (strain SL254)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Catalytic activityi

ATP + L(or D)-ribulose = ADP + L(or D)-ribulose 5-phosphate.UniRule annotation

Pathwayi: L-arabinose degradation via L-ribulose

This protein is involved in step 2 of the subpathway that synthesizes D-xylulose 5-phosphate from L-arabinose (bacterial route).UniRule annotation
Proteins known to be involved in the 3 steps of the subpathway in this organism are:
  1. L-arabinose isomerase (araA)
  2. Ribulokinase (araB)
  3. no protein annotated in this organism
This subpathway is part of the pathway L-arabinose degradation via L-ribulose, which is itself part of Carbohydrate degradation.
View all proteins of this organism that are known to be involved in the subpathway that synthesizes D-xylulose 5-phosphate from L-arabinose (bacterial route), the pathway L-arabinose degradation via L-ribulose and in Carbohydrate degradation.

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Kinase, Transferase

Keywords - Biological processi

Arabinose catabolism, Carbohydrate metabolism

Keywords - Ligandi

ATP-binding, Nucleotide-binding

Enzyme and pathway databases

BioCyciSENT423368:GHJB-109-MONOMER.
UniPathwayiUPA00145; UER00566.

Names & Taxonomyi

Protein namesi
Recommended name:
RibulokinaseUniRule annotation (EC:2.7.1.16UniRule annotation)
Gene namesi
Name:araBUniRule annotation
Ordered Locus Names:SNSL254_A0110
OrganismiSalmonella newport (strain SL254)
Taxonomic identifieri423368 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeSalmonella
Proteomesi
  • UP000008824 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 569569RibulokinasePRO_1000127641Add
BLAST

Structurei

3D structure databases

ProteinModelPortaliB4SU24.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribulokinase family.UniRule annotation

Phylogenomic databases

HOGENOMiHOG000236883.
KOiK00853.
OMAiACTMLPI.
OrthoDBiEOG644ZKP.

Family and domain databases

HAMAPiMF_00520. Ribulokinase.
InterProiIPR018485. Carb_kinase_FGGY_C.
IPR005929. Ribulokinase.
[Graphical view]
PfamiPF02782. FGGY_C. 1 hit.
[Graphical view]
TIGRFAMsiTIGR01234. L-ribulokinase. 1 hit.

Sequencei

Sequence statusi: Complete.

B4SU24-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAIAIGLDFG SDSVRALAVD CATGDEIATS VEWYPRWQEG RYCDGPNNQF
60 70 80 90 100
RHHPRDYMES MEAALKAVLA QLSAAQRANV VGIGVDSTGS TPAPIDADGN
110 120 130 140 150
VLALRPEFAE NPNAMFVLWK DHTAVEEADE ITRLCHKPGK VDYSRYIGGI
160 170 180 190 200
YSSEWFWAKI LHVTRQDSAV AQAAVSWIEL CDWVPALLSG TTRPQDIRRG
210 220 230 240 250
RCSAGHKTLW HESWGGLPPA SFFDELDPCI NRHLRYPLFS ETFTADLPVG
260 270 280 290 300
TLCAEWAQRL GLPESVVISG GAFDCHMGAV GAGAQPNTLV KVIGTSTCDI
310 320 330 340 350
LIADKQSVGD RAVKGICGQV DGSVVPNFIG LEAGQSAFGD IYAWFSRVLS
360 370 380 390 400
WPLEQLAAQH PELKTQINAS QKQLLPALTD AWAKNPSLDH LPVVLDWFNG
410 420 430 440 450
RRTPNANQRL KGVITDLNLA TDAPALFGGL VASTAFGARA IQECFTEQGI
460 470 480 490 500
AVNNVMALGG IARKNQVIMQ VCCDVLNRPL QIVASDQCCA LGAAIFAAVA
510 520 530 540 550
AKVHADIPAA QQSMASAVER TLRPRPEQAQ RLEQLYRRYQ QWALSAEQHY
560
LPTAAPAPTT PANQAILTH
Length:569
Mass (Da):61,697
Last modified:September 23, 2008 - v1
Checksum:iA791390450837ACE
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001113 Genomic DNA. Translation: ACF64618.1.
RefSeqiWP_000951820.1. NZ_CCMR01000003.1.

Genome annotation databases

EnsemblBacteriaiACF64618; ACF64618; SNSL254_A0110.
KEGGisee:SNSL254_A0110.
PATRICi18518680. VBISalEnt114557_0267.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001113 Genomic DNA. Translation: ACF64618.1.
RefSeqiWP_000951820.1. NZ_CCMR01000003.1.

3D structure databases

ProteinModelPortaliB4SU24.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACF64618; ACF64618; SNSL254_A0110.
KEGGisee:SNSL254_A0110.
PATRICi18518680. VBISalEnt114557_0267.

Phylogenomic databases

HOGENOMiHOG000236883.
KOiK00853.
OMAiACTMLPI.
OrthoDBiEOG644ZKP.

Enzyme and pathway databases

UniPathwayiUPA00145; UER00566.
BioCyciSENT423368:GHJB-109-MONOMER.

Family and domain databases

HAMAPiMF_00520. Ribulokinase.
InterProiIPR018485. Carb_kinase_FGGY_C.
IPR005929. Ribulokinase.
[Graphical view]
PfamiPF02782. FGGY_C. 1 hit.
[Graphical view]
TIGRFAMsiTIGR01234. L-ribulokinase. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Comparative genomics of 28 Salmonella enterica isolates: evidence for CRISPR-mediated adaptive sublineage evolution."
    Fricke W.F., Mammel M.K., McDermott P.F., Tartera C., White D.G., Leclerc J.E., Ravel J., Cebula T.A.
    J. Bacteriol. 193:3556-3568(2011) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: SL254.

Entry informationi

Entry nameiARAB_SALNS
AccessioniPrimary (citable) accession number: B4SU24
Entry historyi
Integrated into UniProtKB/Swiss-Prot: April 14, 2009
Last sequence update: September 23, 2008
Last modified: November 11, 2015
This is version 52 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. PATHWAY comments
    Index of metabolic and biosynthesis pathways
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.