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B4SRJ5

- B4SRJ5_STRM5

UniProt

B4SRJ5 - B4SRJ5_STRM5

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Protein
Submitted name:

ATP dependent DNA ligase

Gene
Smal_2960
Organism
Stenotrophomonas maltophilia (strain R551-3)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA binding Source: InterPro
  3. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciSMAL391008:GH1H-3031-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:Smal_2960Imported
OrganismiStenotrophomonas maltophilia (strain R551-3)Imported
Taxonomic identifieri391008 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaXanthomonadalesXanthomonadaceaeStenotrophomonasStenotrophomonas maltophilia group
ProteomesiUP000001867: Chromosome

PTM / Processingi

Proteomic databases

PRIDEiB4SRJ5.

Interactioni

Protein-protein interaction databases

STRINGi391008.Smal_2960.

Structurei

3D structure databases

ProteinModelPortaliB4SRJ5.

Family & Domainsi

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000036007.
KOiK01971.
OMAiNRHKSGV.
OrthoDBiEOG6Q8HXT.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B4SRJ5-1 [UniParc]FASTAAdd to Basket

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MKAFAALYQR LDRSTATLDK RAALVDYFRH ARAHDAAWAL YLLSGGKVGG    50
ARRKIAASGE LRAWIAEESA LPPWLVEDSY AQVGDLAETL TLLLDDPAQP 100
SLDRPLAEWI EQHLLAVANQ PEPVRREAVV SGWQQLCSRE RLVFNKLLTG 150
ALRVGVSQRL VQQALAEWSG LDIARIAQRM LGDWVPSPGL LGQLLSPDEL 200
PLDRQQPYPF FLASPLEGAP GDRLGPVDDW LLEWKWDGIR LQLLRRRGEV 250
ALWSRGEERL DGRFPEIEQA AMGLPDGCVL DGELLAWDEA TGLPRAFTAL 300
QTRIQRRKPG AATLRNTPVR VLAYDLLEQE GADLRGLPLQ QRRMRLAEVI 350
GALGDTRIQL SPEVPADDWS QAAALREAAR ERGVEGLMVK RRASAYQSGR 400
RRGDWWKWKV DPLTIDAVLL YAQAGHGRRS TLYTDYTFGI WDGDTLVPVA 450
KAYSGLDDKE ILALDRWIRA NTRERFGPVR SVRAEQVFEL GFEAVNRSSR 500
HKSGIAVRFP RILRWRHDKP ASEADQLATL QALAR 535
Length:535
Mass (Da):60,060
Last modified:September 23, 2008 - v1
Checksum:i5221F493A8B2016D
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001111 Genomic DNA. Translation: ACF52659.1.
RefSeqiYP_002029342.1. NC_011071.1.

Genome annotation databases

EnsemblBacteriaiACF52659; ACF52659; Smal_2960.
GeneIDi6475707.
KEGGismt:Smal_2960.
PATRICi23710896. VBISteMal40512_2982.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001111 Genomic DNA. Translation: ACF52659.1 .
RefSeqi YP_002029342.1. NC_011071.1.

3D structure databases

ProteinModelPortali B4SRJ5.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 391008.Smal_2960.

Proteomic databases

PRIDEi B4SRJ5.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ACF52659 ; ACF52659 ; Smal_2960 .
GeneIDi 6475707.
KEGGi smt:Smal_2960.
PATRICi 23710896. VBISteMal40512_2982.

Phylogenomic databases

eggNOGi COG1793.
HOGENOMi HOG000036007.
KOi K01971.
OMAi NRHKSGV.
OrthoDBi EOG6Q8HXT.

Enzyme and pathway databases

BioCyci SMAL391008:GH1H-3031-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR04120. DNA_lig_bact. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: R551-3Imported.

Entry informationi

Entry nameiB4SRJ5_STRM5
AccessioniPrimary (citable) accession number: B4SRJ5
Entry historyi
Integrated into UniProtKB/TrEMBL: September 23, 2008
Last sequence update: September 23, 2008
Last modified: May 14, 2014
This is version 40 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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