B4SRJ5 (B4SRJ5_STRM5) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
ATP dependent DNA ligase EMBL ACF52659.1

Gene names

Ordered Locus Names:

Smal_2960 EMBL ACF52659.1

Organism

Stenotrophomonas maltophilia (strain R551-3) [Complete proteome] [HAMAP] EMBL ACF52659.1

Taxonomic identifier

391008 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Gammaproteobacteria › Xanthomonadales › Xanthomonadaceae › Stenotrophomonas › Stenotrophomonas maltophilia group › Stenotrophomonas maltophilia

Protein attributes

Sequence length	535 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL ACF52659.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA recombination Inferred from electronic annotation. Source: InterPro DNA repair Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	B4SRJ5 [UniParc]. Last modified September 23, 2008. Version 1. Checksum: 5221F493A8B2016D	FASTA	535	60,060
	10 20 30 40 50 60 MKAFAALYQR LDRSTATLDK RAALVDYFRH ARAHDAAWAL YLLSGGKVGG ARRKIAASGE 70 80 90 100 110 120 LRAWIAEESA LPPWLVEDSY AQVGDLAETL TLLLDDPAQP SLDRPLAEWI EQHLLAVANQ 130 140 150 160 170 180 PEPVRREAVV SGWQQLCSRE RLVFNKLLTG ALRVGVSQRL VQQALAEWSG LDIARIAQRM 190 200 210 220 230 240 LGDWVPSPGL LGQLLSPDEL PLDRQQPYPF FLASPLEGAP GDRLGPVDDW LLEWKWDGIR 250 260 270 280 290 300 LQLLRRRGEV ALWSRGEERL DGRFPEIEQA AMGLPDGCVL DGELLAWDEA TGLPRAFTAL 310 320 330 340 350 360 QTRIQRRKPG AATLRNTPVR VLAYDLLEQE GADLRGLPLQ QRRMRLAEVI GALGDTRIQL 370 380 390 400 410 420 SPEVPADDWS QAAALREAAR ERGVEGLMVK RRASAYQSGR RRGDWWKWKV DPLTIDAVLL 430 440 450 460 470 480 YAQAGHGRRS TLYTDYTFGI WDGDTLVPVA KAYSGLDDKE ILALDRWIRA NTRERFGPVR 490 500 510 520 530 SVRAEQVFEL GFEAVNRSSR HKSGIAVRFP RILRWRHDKP ASEADQLATL QALAR

References

[1]

"Complete sequence of Stenotrophomonas maltophilia R551-3." US DOE Joint Genome Institute Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Lang D., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N. , Taghavi S., Monchy S., Newman L., Vangronsveld J., van der Lelie D., Richardson P. Submitted (JUN-2008) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: R551-3 EMBL ACF52659.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001111 Genomic DNA. Translation: ACF52659.1.
RefSeq	YP_002029342.1. NC_011071.1.
3D structure databases
ProteinModelPortal	B4SRJ5.
ModBase	Search...
Protein-protein interaction databases
STRING	391008.Smal_2960. B4SRJ5.
Proteomic databases
PRIDE	B4SRJ5.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ACF52659; ACF52659; Smal_2960.
GeneID	6475707.
KEGG	smt:Smal_2960.
PATRIC	23710896. VBISteMal40512_2982.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG1793.
HOGENOM	HOG000036007.
KO	K01971.
OMA	AYDLLEW.
ProtClustDB	PRK09247.
Enzyme and pathway databases
BioCyc	SMAL391008:GH1H-3030-MONOMER.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR026333. ATP_dep_DNA_lig_pp_1105_fam. IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR012308. DNA_ligase_ATP-dep_N. IPR012340. NA-bd_OB-fold. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. PF04675. DNA_ligase_A_N. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMs	TIGR04120. DNA_lig_bact. 1 hit.
PROSITE	PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

B4SRJ5_STRM5

Accession

Primary (citable) accession number: B4SRJ5

Entry history

Integrated into UniProtKB/TrEMBL:	September 23, 2008
Last sequence update:	September 23, 2008
Last modified:	May 1, 2013
This is version 34 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)