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B4SRJ5

- B4SRJ5_STRM5

UniProt

B4SRJ5 - B4SRJ5_STRM5

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Protein
Submitted name:

ATP dependent DNA ligase

Gene

Smal_2960

Organism
Stenotrophomonas maltophilia (strain R551-3)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA binding Source: InterPro
  3. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciSMAL391008:GH1H-3031-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:Smal_2960Imported
OrganismiStenotrophomonas maltophilia (strain R551-3)Imported
Taxonomic identifieri391008 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaXanthomonadalesXanthomonadaceaeStenotrophomonasStenotrophomonas maltophilia group
ProteomesiUP000001867: Chromosome

PTM / Processingi

Proteomic databases

PRIDEiB4SRJ5.

Interactioni

Protein-protein interaction databases

STRINGi391008.Smal_2960.

Structurei

3D structure databases

ProteinModelPortaliB4SRJ5.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000036007.
KOiK01971.
OMAiNRHKSGV.
OrthoDBiEOG6Q8HXT.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B4SRJ5-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MKAFAALYQR LDRSTATLDK RAALVDYFRH ARAHDAAWAL YLLSGGKVGG
60 70 80 90 100
ARRKIAASGE LRAWIAEESA LPPWLVEDSY AQVGDLAETL TLLLDDPAQP
110 120 130 140 150
SLDRPLAEWI EQHLLAVANQ PEPVRREAVV SGWQQLCSRE RLVFNKLLTG
160 170 180 190 200
ALRVGVSQRL VQQALAEWSG LDIARIAQRM LGDWVPSPGL LGQLLSPDEL
210 220 230 240 250
PLDRQQPYPF FLASPLEGAP GDRLGPVDDW LLEWKWDGIR LQLLRRRGEV
260 270 280 290 300
ALWSRGEERL DGRFPEIEQA AMGLPDGCVL DGELLAWDEA TGLPRAFTAL
310 320 330 340 350
QTRIQRRKPG AATLRNTPVR VLAYDLLEQE GADLRGLPLQ QRRMRLAEVI
360 370 380 390 400
GALGDTRIQL SPEVPADDWS QAAALREAAR ERGVEGLMVK RRASAYQSGR
410 420 430 440 450
RRGDWWKWKV DPLTIDAVLL YAQAGHGRRS TLYTDYTFGI WDGDTLVPVA
460 470 480 490 500
KAYSGLDDKE ILALDRWIRA NTRERFGPVR SVRAEQVFEL GFEAVNRSSR
510 520 530
HKSGIAVRFP RILRWRHDKP ASEADQLATL QALAR
Length:535
Mass (Da):60,060
Last modified:September 23, 2008 - v1
Checksum:i5221F493A8B2016D
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001111 Genomic DNA. Translation: ACF52659.1.
RefSeqiWP_006382708.1. NC_011071.1.
YP_002029342.1. NC_011071.1.

Genome annotation databases

EnsemblBacteriaiACF52659; ACF52659; Smal_2960.
GeneIDi6475707.
KEGGismt:Smal_2960.
PATRICi23710896. VBISteMal40512_2982.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001111 Genomic DNA. Translation: ACF52659.1 .
RefSeqi WP_006382708.1. NC_011071.1.
YP_002029342.1. NC_011071.1.

3D structure databases

ProteinModelPortali B4SRJ5.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 391008.Smal_2960.

Proteomic databases

PRIDEi B4SRJ5.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ACF52659 ; ACF52659 ; Smal_2960 .
GeneIDi 6475707.
KEGGi smt:Smal_2960.
PATRICi 23710896. VBISteMal40512_2982.

Phylogenomic databases

eggNOGi COG1793.
HOGENOMi HOG000036007.
KOi K01971.
OMAi NRHKSGV.
OrthoDBi EOG6Q8HXT.

Enzyme and pathway databases

BioCyci SMAL391008:GH1H-3031-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR04120. DNA_lig_bact. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: R551-3Imported.

Entry informationi

Entry nameiB4SRJ5_STRM5
AccessioniPrimary (citable) accession number: B4SRJ5
Entry historyi
Integrated into UniProtKB/TrEMBL: September 23, 2008
Last sequence update: September 23, 2008
Last modified: October 29, 2014
This is version 42 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3