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Protein
Submitted name:

ATP dependent DNA ligase

Gene

Smal_2960

Organism
Stenotrophomonas maltophilia (strain R551-3)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA binding Source: InterPro
  3. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciSMAL391008:GH1H-3031-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:Smal_2960Imported
OrganismiStenotrophomonas maltophilia (strain R551-3)Imported
Taxonomic identifieri391008 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaXanthomonadalesXanthomonadaceaeStenotrophomonasStenotrophomonas maltophilia group
ProteomesiUP000001867 Componenti: Chromosome

PTM / Processingi

Proteomic databases

PRIDEiB4SRJ5.

Interactioni

Protein-protein interaction databases

STRINGi391008.Smal_2960.

Family & Domainsi

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000036007.
KOiK10747.
OMAiGQPYPFF.
OrthoDBiEOG6Q8HXT.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B4SRJ5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKAFAALYQR LDRSTATLDK RAALVDYFRH ARAHDAAWAL YLLSGGKVGG
60 70 80 90 100
ARRKIAASGE LRAWIAEESA LPPWLVEDSY AQVGDLAETL TLLLDDPAQP
110 120 130 140 150
SLDRPLAEWI EQHLLAVANQ PEPVRREAVV SGWQQLCSRE RLVFNKLLTG
160 170 180 190 200
ALRVGVSQRL VQQALAEWSG LDIARIAQRM LGDWVPSPGL LGQLLSPDEL
210 220 230 240 250
PLDRQQPYPF FLASPLEGAP GDRLGPVDDW LLEWKWDGIR LQLLRRRGEV
260 270 280 290 300
ALWSRGEERL DGRFPEIEQA AMGLPDGCVL DGELLAWDEA TGLPRAFTAL
310 320 330 340 350
QTRIQRRKPG AATLRNTPVR VLAYDLLEQE GADLRGLPLQ QRRMRLAEVI
360 370 380 390 400
GALGDTRIQL SPEVPADDWS QAAALREAAR ERGVEGLMVK RRASAYQSGR
410 420 430 440 450
RRGDWWKWKV DPLTIDAVLL YAQAGHGRRS TLYTDYTFGI WDGDTLVPVA
460 470 480 490 500
KAYSGLDDKE ILALDRWIRA NTRERFGPVR SVRAEQVFEL GFEAVNRSSR
510 520 530
HKSGIAVRFP RILRWRHDKP ASEADQLATL QALAR
Length:535
Mass (Da):60,060
Last modified:September 22, 2008 - v1
Checksum:i5221F493A8B2016D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001111 Genomic DNA. Translation: ACF52659.1.
RefSeqiYP_002029342.1. NC_011071.1.

Genome annotation databases

EnsemblBacteriaiACF52659; ACF52659; Smal_2960.
KEGGismt:Smal_2960.
PATRICi23710896. VBISteMal40512_2982.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001111 Genomic DNA. Translation: ACF52659.1.
RefSeqiYP_002029342.1. NC_011071.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi391008.Smal_2960.

Proteomic databases

PRIDEiB4SRJ5.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACF52659; ACF52659; Smal_2960.
KEGGismt:Smal_2960.
PATRICi23710896. VBISteMal40512_2982.

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000036007.
KOiK10747.
OMAiGQPYPFF.
OrthoDBiEOG6Q8HXT.

Enzyme and pathway databases

BioCyciSMAL391008:GH1H-3031-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: R551-3Imported.

Entry informationi

Entry nameiB4SRJ5_STRM5
AccessioniPrimary (citable) accession number: B4SRJ5
Entry historyi
Integrated into UniProtKB/TrEMBL: September 22, 2008
Last sequence update: September 22, 2008
Last modified: March 31, 2015
This is version 46 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.