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B4SRJ5 (B4SRJ5_STRM5) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 39. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein attributes

Sequence length535 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLigase EMBL ACF52659.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA recombination

Inferred from electronic annotation. Source: InterPro

DNA repair

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
B4SRJ5 [UniParc].

Last modified September 23, 2008. Version 1.
Checksum: 5221F493A8B2016D

FASTA53560,060
        10         20         30         40         50         60 
MKAFAALYQR LDRSTATLDK RAALVDYFRH ARAHDAAWAL YLLSGGKVGG ARRKIAASGE 

        70         80         90        100        110        120 
LRAWIAEESA LPPWLVEDSY AQVGDLAETL TLLLDDPAQP SLDRPLAEWI EQHLLAVANQ 

       130        140        150        160        170        180 
PEPVRREAVV SGWQQLCSRE RLVFNKLLTG ALRVGVSQRL VQQALAEWSG LDIARIAQRM 

       190        200        210        220        230        240 
LGDWVPSPGL LGQLLSPDEL PLDRQQPYPF FLASPLEGAP GDRLGPVDDW LLEWKWDGIR 

       250        260        270        280        290        300 
LQLLRRRGEV ALWSRGEERL DGRFPEIEQA AMGLPDGCVL DGELLAWDEA TGLPRAFTAL 

       310        320        330        340        350        360 
QTRIQRRKPG AATLRNTPVR VLAYDLLEQE GADLRGLPLQ QRRMRLAEVI GALGDTRIQL 

       370        380        390        400        410        420 
SPEVPADDWS QAAALREAAR ERGVEGLMVK RRASAYQSGR RRGDWWKWKV DPLTIDAVLL 

       430        440        450        460        470        480 
YAQAGHGRRS TLYTDYTFGI WDGDTLVPVA KAYSGLDDKE ILALDRWIRA NTRERFGPVR 

       490        500        510        520        530 
SVRAEQVFEL GFEAVNRSSR HKSGIAVRFP RILRWRHDKP ASEADQLATL QALAR 

« Hide

References

[1]"Complete sequence of Stenotrophomonas maltophilia R551-3."
US DOE Joint Genome Institute
Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Lang D., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N. expand/collapse author list , Taghavi S., Monchy S., Newman L., Vangronsveld J., van der Lelie D., Richardson P.
Submitted (JUN-2008) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: R551-3 EMBL ACF52659.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP001111 Genomic DNA. Translation: ACF52659.1.
RefSeqYP_002029342.1. NC_011071.1.

3D structure databases

ProteinModelPortalB4SRJ5.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING391008.Smal_2960.

Proteomic databases

PRIDEB4SRJ5.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACF52659; ACF52659; Smal_2960.
GeneID6475707.
KEGGsmt:Smal_2960.
PATRIC23710896. VBISteMal40512_2982.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG1793.
HOGENOMHOG000036007.
KOK01971.
OMAGQPYPFF.
OrthoDBEOG6Q8HXT.
ProtClustDBPRK09247.

Enzyme and pathway databases

BioCycSMAL391008:GH1H-3031-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR04120. DNA_lig_bact. 1 hit.
PROSITEPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameB4SRJ5_STRM5
AccessionPrimary (citable) accession number: B4SRJ5
Entry history
Integrated into UniProtKB/TrEMBL: September 23, 2008
Last sequence update: September 23, 2008
Last modified: April 16, 2014
This is version 39 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)