Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Basket 0
(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

B4SRJ5

- B4SRJ5_STRM5

UniProt

B4SRJ5 - B4SRJ5_STRM5

Protein
Submitted name:

ATP dependent DNA ligase

Gene

Smal_2960

Organism
Stenotrophomonas maltophilia (strain R551-3)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
    • BLAST
    • Align
    • Format
    • Add to basket
    • History
      Entry version 41 (01 Oct 2014)
      Sequence version 1 (23 Sep 2008)
      Previous versions | rss
    • Help video
    • Feedback
    • Comment

    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA binding Source: InterPro
    3. DNA ligase (ATP) activity Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciSMAL391008:GH1H-3031-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    ATP dependent DNA ligaseImported
    Gene namesi
    Ordered Locus Names:Smal_2960Imported
    OrganismiStenotrophomonas maltophilia (strain R551-3)Imported
    Taxonomic identifieri391008 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaXanthomonadalesXanthomonadaceaeStenotrophomonasStenotrophomonas maltophilia group
    ProteomesiUP000001867: Chromosome

    PTM / Processingi

    Proteomic databases

    PRIDEiB4SRJ5.

    Interactioni

    Protein-protein interaction databases

    STRINGi391008.Smal_2960.

    Structurei

    3D structure databases

    ProteinModelPortaliB4SRJ5.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    eggNOGiCOG1793.
    HOGENOMiHOG000036007.
    KOiK01971.
    OMAiNRHKSGV.
    OrthoDBiEOG6Q8HXT.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    B4SRJ5-1 [UniParc]FASTAAdd to Basket

    « Hide

    MKAFAALYQR LDRSTATLDK RAALVDYFRH ARAHDAAWAL YLLSGGKVGG    50
    ARRKIAASGE LRAWIAEESA LPPWLVEDSY AQVGDLAETL TLLLDDPAQP 100
    SLDRPLAEWI EQHLLAVANQ PEPVRREAVV SGWQQLCSRE RLVFNKLLTG 150
    ALRVGVSQRL VQQALAEWSG LDIARIAQRM LGDWVPSPGL LGQLLSPDEL 200
    PLDRQQPYPF FLASPLEGAP GDRLGPVDDW LLEWKWDGIR LQLLRRRGEV 250
    ALWSRGEERL DGRFPEIEQA AMGLPDGCVL DGELLAWDEA TGLPRAFTAL 300
    QTRIQRRKPG AATLRNTPVR VLAYDLLEQE GADLRGLPLQ QRRMRLAEVI 350
    GALGDTRIQL SPEVPADDWS QAAALREAAR ERGVEGLMVK RRASAYQSGR 400
    RRGDWWKWKV DPLTIDAVLL YAQAGHGRRS TLYTDYTFGI WDGDTLVPVA 450
    KAYSGLDDKE ILALDRWIRA NTRERFGPVR SVRAEQVFEL GFEAVNRSSR 500
    HKSGIAVRFP RILRWRHDKP ASEADQLATL QALAR 535
    Length:535
    Mass (Da):60,060
    Last modified:September 23, 2008 - v1
    Checksum:i5221F493A8B2016D
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001111 Genomic DNA. Translation: ACF52659.1.
    RefSeqiYP_002029342.1. NC_011071.1.

    Genome annotation databases

    EnsemblBacteriaiACF52659; ACF52659; Smal_2960.
    GeneIDi6475707.
    KEGGismt:Smal_2960.
    PATRICi23710896. VBISteMal40512_2982.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001111 Genomic DNA. Translation: ACF52659.1 .
    RefSeqi YP_002029342.1. NC_011071.1.

    3D structure databases

    ProteinModelPortali B4SRJ5.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 391008.Smal_2960.

    Proteomic databases

    PRIDEi B4SRJ5.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ACF52659 ; ACF52659 ; Smal_2960 .
    GeneIDi 6475707.
    KEGGi smt:Smal_2960.
    PATRICi 23710896. VBISteMal40512_2982.

    Phylogenomic databases

    eggNOGi COG1793.
    HOGENOMi HOG000036007.
    KOi K01971.
    OMAi NRHKSGV.
    OrthoDBi EOG6Q8HXT.

    Enzyme and pathway databases

    BioCyci SMAL391008:GH1H-3031-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR026333. ATP_dep_DNA_lig_pp_1105_fam.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR04120. DNA_lig_bact. 1 hit.
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: R551-3Imported.

    Entry informationi

    Entry nameiB4SRJ5_STRM5
    AccessioniPrimary (citable) accession number: B4SRJ5
    Entry historyi
    Integrated into UniProtKB/TrEMBL: September 23, 2008
    Last sequence update: September 23, 2008
    Last modified: October 1, 2014
    This is version 41 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3