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B4SKV7

- B4SKV7_STRM5

UniProt

B4SKV7 - B4SKV7_STRM5

Protein

DNA-directed RNA polymerase subunit beta'

Gene

rpoC

Organism
Stenotrophomonas maltophilia (strain R551-3)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 46 (01 Oct 2014)
      Sequence version 1 (23 Sep 2008)
      Previous versions | rss
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    Functioni

    DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.UniRule annotationSAAS annotation

    Catalytic activityi

    Nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1).UniRule annotationSAAS annotation

    GO - Molecular functioni

    1. DNA binding Source: UniProtKB-HAMAP
    2. DNA-directed RNA polymerase activity Source: UniProtKB-HAMAP

    GO - Biological processi

    1. transcription, DNA-templated Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    NucleotidyltransferaseUniRule annotationSAAS annotation, Transferase

    Keywords - Biological processi

    Transcription

    Enzyme and pathway databases

    BioCyciSMAL391008:GH1H-768-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    DNA-directed RNA polymerase subunit beta'UniRule annotation (EC:2.7.7.6UniRule annotation)
    Short name:
    RNAP subunit beta'UniRule annotation
    Alternative name(s):
    RNA polymerase subunit beta'UniRule annotation
    Transcriptase subunit beta'UniRule annotation
    Gene namesi
    Name:rpoCUniRule annotation
    Ordered Locus Names:Smal_0750Imported
    OrganismiStenotrophomonas maltophilia (strain R551-3)Imported
    Taxonomic identifieri391008 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaXanthomonadalesXanthomonadaceaeStenotrophomonasStenotrophomonas maltophilia group
    ProteomesiUP000001867: Chromosome

    Subcellular locationi

    Keywords - Cellular componenti

    DNA-directed RNA polymeraseUniRule annotationSAAS annotationImported

    Interactioni

    Subunit structurei

    The RNAP catalytic core consists of 2 alpha, 1 beta, 1 beta' and 1 omega subunit. When a sigma factor is associated with the core the holoenzyme is formed, which can initiate transcription.UniRule annotation

    Protein-protein interaction databases

    STRINGi391008.Smal_0750.

    Structurei

    3D structure databases

    ProteinModelPortaliB4SKV7.
    SMRiB4SKV7. Positions 909-1129.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the RNA polymerase beta' chain family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG0086.
    HOGENOMiHOG000218386.
    KOiK03046.
    OMAiAYDSEFL.
    OrthoDBiEOG6M9DS6.

    Family and domain databases

    HAMAPiMF_01322. RNApol_bact_RpoC.
    InterProiIPR012754. DNA-dir_RpoC_beta_prime.
    IPR000722. RNA_pol_asu.
    IPR006592. RNA_pol_N.
    IPR007080. RNA_pol_Rpb1_1.
    IPR007066. RNA_pol_Rpb1_3.
    IPR007083. RNA_pol_Rpb1_4.
    IPR007081. RNA_pol_Rpb1_5.
    [Graphical view]
    PfamiPF04997. RNA_pol_Rpb1_1. 1 hit.
    PF00623. RNA_pol_Rpb1_2. 1 hit.
    PF04983. RNA_pol_Rpb1_3. 1 hit.
    PF05000. RNA_pol_Rpb1_4. 1 hit.
    PF04998. RNA_pol_Rpb1_5. 1 hit.
    [Graphical view]
    SMARTiSM00663. RPOLA_N. 1 hit.
    [Graphical view]
    TIGRFAMsiTIGR02386. rpoC_TIGR. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    B4SKV7-1 [UniParc]FASTAAdd to Basket

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    MKDLLNLFNQ QRQTLDFDAI KIALASPDLI RSWSFGEVKK PETINYRTFK     50
    PERDGLFCAA IFGPVKDYEC LCGKYKRMKH RGVVCEKCGT EVTLAKVRRE 100
    RMGHIDLASP VAHIWFLKSL PSRIGLMLDM TLRDIERVLY FEAYVVTEPG 150
    LTALERRQLL TEEQYLQARQ EHGDDFDAAM GAEAVYELLR TIDLQSEMTR 200
    LREEIASTGS ETKLKRLTKR IKLIEAFLES GNRPEWMVMT VLPVLPPDLR 250
    PLVPLDGGRF ATSDLNDLYR RVINRNNRLR RLLELSAPDI IVRNEKRMLQ 300
    ESVDALLDNG RRGRAITGTN KRPLKSLADM IKGKQGRFRQ NLLGKRVDYS 350
    GRSVIVVGPY LRLHQCGLPK KMALELFKPF VFAKLQRRGL ATTIKAAKKL 400
    VEREEAEVWD ILEEVIREHP VMLNRAPTLH RLGIQAFEPV LIEGKAIQLH 450
    PLVCTAFNAD FDGDQMAVHV PLSLEAQLEA RALMMSTNNI LSPANGEPII 500
    VPSQDVVLGL YYMTRSLENK KGEGMAFANI AEVKRAYDNR VVELHARVKV 550
    RITEVVTDED GIKQNKTSIV DTTIGRALLA EILPEGLPFA LANTELTKKN 600
    ISRLINSSYR QLGLKDTVVF ADKLMYTGFA YATRAGVSIG IDDMLIPDEK 650
    KGILTEAEAE VLEIQEQYQS GLVTAGERYN KVVDIWSRTN ERIAKAMMDT 700
    IGTEKVVNAK GETIDQKSMN SLYIMADSGA RGSQAQIRQL AGMRGLMARP 750
    DGSIIETPIK ANFREGLNVQ EYFNSTHGAR KGLADTALKT ANSGYLTRRL 800
    VDVAQDVVIT EVDCGTTEGL IMTPIVEGGD VVEPLKDRVL GRVVAEDVFL 850
    PGNDEDPIVT RNTLLDEAWV AKLEDAGVQT IKVRSTISCE SAFGVCGRCY 900
    GRDLARGHIV NIGEAVGVIA AQSIGEPGTQ LTMRTFHIGG AASRAAAVDN 950
    ITVKTTGSVK FSNLKSVEHA NGSLVAVSRS GEISVLDAHG RERERYKLPY 1000
    GSMIASKDGD AVKAGQTVAN WDPHNHPIVS EVAGFIRFID FIDGVTVIEK 1050
    TDELTGLASR EITDPKRRGA QAKDLRPIVR IVDAKGNDLT IPGTDLPAQY 1100
    LLPPRSIVNL QDGAAVGVGD VVAKIPQEAS KTRDITGGLP RVADLFEARK 1150
    PKDPAVLAER SGIISFGKDT KGKQRLIIKD TDGSEHEELI PKYRQVIVFE 1200
    GEHVTKGETI VDGEPSPQDI LRLLGVEPLA AYLVKEIQDV YRLQGVKIND 1250
    KHIEVITRQM LRKVEITDQG SSKFLNGEQV ERQRVIEENA RLGARNELIA 1300
    RFDPVLLGIT KASLATESFI SAASFQETTR VLTEAAVRGT KDNLRGLKEN 1350
    VIVGRLIPAG TGLSYHSNRR RGASGLTESE MQTLSGTPAV VEAPAVEAET 1400
    EQASGEE 1407
    Length:1,407
    Mass (Da):155,452
    Last modified:September 23, 2008 - v1
    Checksum:i296791D1CB130791
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001111 Genomic DNA. Translation: ACF50455.1.
    RefSeqiYP_002027138.1. NC_011071.1.

    Genome annotation databases

    EnsemblBacteriaiACF50455; ACF50455; Smal_0750.
    GeneIDi6477853.
    KEGGismt:Smal_0750.
    PATRICi23706354. VBISteMal40512_0764.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001111 Genomic DNA. Translation: ACF50455.1 .
    RefSeqi YP_002027138.1. NC_011071.1.

    3D structure databases

    ProteinModelPortali B4SKV7.
    SMRi B4SKV7. Positions 909-1129.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 391008.Smal_0750.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ACF50455 ; ACF50455 ; Smal_0750 .
    GeneIDi 6477853.
    KEGGi smt:Smal_0750.
    PATRICi 23706354. VBISteMal40512_0764.

    Phylogenomic databases

    eggNOGi COG0086.
    HOGENOMi HOG000218386.
    KOi K03046.
    OMAi AYDSEFL.
    OrthoDBi EOG6M9DS6.

    Enzyme and pathway databases

    BioCyci SMAL391008:GH1H-768-MONOMER.

    Family and domain databases

    HAMAPi MF_01322. RNApol_bact_RpoC.
    InterProi IPR012754. DNA-dir_RpoC_beta_prime.
    IPR000722. RNA_pol_asu.
    IPR006592. RNA_pol_N.
    IPR007080. RNA_pol_Rpb1_1.
    IPR007066. RNA_pol_Rpb1_3.
    IPR007083. RNA_pol_Rpb1_4.
    IPR007081. RNA_pol_Rpb1_5.
    [Graphical view ]
    Pfami PF04997. RNA_pol_Rpb1_1. 1 hit.
    PF00623. RNA_pol_Rpb1_2. 1 hit.
    PF04983. RNA_pol_Rpb1_3. 1 hit.
    PF05000. RNA_pol_Rpb1_4. 1 hit.
    PF04998. RNA_pol_Rpb1_5. 1 hit.
    [Graphical view ]
    SMARTi SM00663. RPOLA_N. 1 hit.
    [Graphical view ]
    TIGRFAMsi TIGR02386. rpoC_TIGR. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: R551-3Imported.

    Entry informationi

    Entry nameiB4SKV7_STRM5
    AccessioniPrimary (citable) accession number: B4SKV7
    Entry historyi
    Integrated into UniProtKB/TrEMBL: September 23, 2008
    Last sequence update: September 23, 2008
    Last modified: October 1, 2014
    This is version 46 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3