SubmitCancel

Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.

B4SKV7

- B4SKV7_STRM5

UniProt

B4SKV7 - B4SKV7_STRM5

(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

Protein
DNA-directed RNA polymerase subunit beta'
Gene
rpoC, Smal_0750
Organism
Stenotrophomonas maltophilia (strain R551-3)
Status
Unreviewed - Annotation score: 2 out of 5 - Protein inferred from homologyi

Functioni

DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates By similarity.UniRule annotation

Catalytic activityi

Nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1).UniRule annotationSAAS annotations

GO - Molecular functioni

  1. DNA binding Source: UniProtKB-HAMAP
  2. DNA-directed RNA polymerase activity Source: UniProtKB-HAMAP

GO - Biological processi

  1. transcription, DNA-templated Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

NucleotidyltransferaseUniRule annotationSAAS annotations, Transferase

Keywords - Biological processi

Transcription

Enzyme and pathway databases

BioCyciSMAL391008:GH1H-768-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
DNA-directed RNA polymerase subunit beta'UniRule annotation (EC:2.7.7.6UniRule annotation)
Short name:
RNAP subunit beta'UniRule annotation
Alternative name(s):
RNA polymerase subunit beta'
Transcriptase subunit beta'
Gene namesi
Name:rpoCUniRule annotation
Ordered Locus Names:Smal_0750Imported
OrganismiStenotrophomonas maltophilia (strain R551-3)Imported
Taxonomic identifieri391008 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaXanthomonadalesXanthomonadaceaeStenotrophomonasStenotrophomonas maltophilia group
ProteomesiUP000001867: Chromosome

Subcellular locationi

Keywords - Cellular componenti

DNA-directed RNA polymeraseUniRule annotationSAAS annotationsImported

Interactioni

Subunit structurei

The RNAP catalytic core consists of 2 alpha, 1 beta, 1 beta' and 1 omega subunit. When a sigma factor is associated with the core the holoenzyme is formed, which can initiate transcription By similarity.UniRule annotation

Protein-protein interaction databases

STRINGi391008.Smal_0750.

Structurei

3D structure databases

ProteinModelPortaliB4SKV7.
SMRiB4SKV7. Positions 909-1129.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiCOG0086.
HOGENOMiHOG000218386.
KOiK03046.
OMAiAYDSEFL.
OrthoDBiEOG6M9DS6.

Family and domain databases

HAMAPiMF_01322. RNApol_bact_RpoC.
InterProiIPR012754. DNA-dir_RpoC_beta_prime.
IPR000722. RNA_pol_asu.
IPR006592. RNA_pol_N.
IPR007080. RNA_pol_Rpb1_1.
IPR007066. RNA_pol_Rpb1_3.
IPR007083. RNA_pol_Rpb1_4.
IPR007081. RNA_pol_Rpb1_5.
[Graphical view]
PfamiPF04997. RNA_pol_Rpb1_1. 1 hit.
PF00623. RNA_pol_Rpb1_2. 1 hit.
PF04983. RNA_pol_Rpb1_3. 1 hit.
PF05000. RNA_pol_Rpb1_4. 1 hit.
PF04998. RNA_pol_Rpb1_5. 1 hit.
[Graphical view]
SMARTiSM00663. RPOLA_N. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02386. rpoC_TIGR. 1 hit.

Sequencei

Sequence statusi: Complete.

B4SKV7-1 [UniParc]FASTAAdd to Basket

« Hide

MKDLLNLFNQ QRQTLDFDAI KIALASPDLI RSWSFGEVKK PETINYRTFK     50
PERDGLFCAA IFGPVKDYEC LCGKYKRMKH RGVVCEKCGT EVTLAKVRRE 100
RMGHIDLASP VAHIWFLKSL PSRIGLMLDM TLRDIERVLY FEAYVVTEPG 150
LTALERRQLL TEEQYLQARQ EHGDDFDAAM GAEAVYELLR TIDLQSEMTR 200
LREEIASTGS ETKLKRLTKR IKLIEAFLES GNRPEWMVMT VLPVLPPDLR 250
PLVPLDGGRF ATSDLNDLYR RVINRNNRLR RLLELSAPDI IVRNEKRMLQ 300
ESVDALLDNG RRGRAITGTN KRPLKSLADM IKGKQGRFRQ NLLGKRVDYS 350
GRSVIVVGPY LRLHQCGLPK KMALELFKPF VFAKLQRRGL ATTIKAAKKL 400
VEREEAEVWD ILEEVIREHP VMLNRAPTLH RLGIQAFEPV LIEGKAIQLH 450
PLVCTAFNAD FDGDQMAVHV PLSLEAQLEA RALMMSTNNI LSPANGEPII 500
VPSQDVVLGL YYMTRSLENK KGEGMAFANI AEVKRAYDNR VVELHARVKV 550
RITEVVTDED GIKQNKTSIV DTTIGRALLA EILPEGLPFA LANTELTKKN 600
ISRLINSSYR QLGLKDTVVF ADKLMYTGFA YATRAGVSIG IDDMLIPDEK 650
KGILTEAEAE VLEIQEQYQS GLVTAGERYN KVVDIWSRTN ERIAKAMMDT 700
IGTEKVVNAK GETIDQKSMN SLYIMADSGA RGSQAQIRQL AGMRGLMARP 750
DGSIIETPIK ANFREGLNVQ EYFNSTHGAR KGLADTALKT ANSGYLTRRL 800
VDVAQDVVIT EVDCGTTEGL IMTPIVEGGD VVEPLKDRVL GRVVAEDVFL 850
PGNDEDPIVT RNTLLDEAWV AKLEDAGVQT IKVRSTISCE SAFGVCGRCY 900
GRDLARGHIV NIGEAVGVIA AQSIGEPGTQ LTMRTFHIGG AASRAAAVDN 950
ITVKTTGSVK FSNLKSVEHA NGSLVAVSRS GEISVLDAHG RERERYKLPY 1000
GSMIASKDGD AVKAGQTVAN WDPHNHPIVS EVAGFIRFID FIDGVTVIEK 1050
TDELTGLASR EITDPKRRGA QAKDLRPIVR IVDAKGNDLT IPGTDLPAQY 1100
LLPPRSIVNL QDGAAVGVGD VVAKIPQEAS KTRDITGGLP RVADLFEARK 1150
PKDPAVLAER SGIISFGKDT KGKQRLIIKD TDGSEHEELI PKYRQVIVFE 1200
GEHVTKGETI VDGEPSPQDI LRLLGVEPLA AYLVKEIQDV YRLQGVKIND 1250
KHIEVITRQM LRKVEITDQG SSKFLNGEQV ERQRVIEENA RLGARNELIA 1300
RFDPVLLGIT KASLATESFI SAASFQETTR VLTEAAVRGT KDNLRGLKEN 1350
VIVGRLIPAG TGLSYHSNRR RGASGLTESE MQTLSGTPAV VEAPAVEAET 1400
EQASGEE 1407
Length:1,407
Mass (Da):155,452
Last modified:September 23, 2008 - v1
Checksum:i296791D1CB130791
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001111 Genomic DNA. Translation: ACF50455.1.
RefSeqiYP_002027138.1. NC_011071.1.

Genome annotation databases

EnsemblBacteriaiACF50455; ACF50455; Smal_0750.
GeneIDi6477853.
KEGGismt:Smal_0750.
PATRICi23706354. VBISteMal40512_0764.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001111 Genomic DNA. Translation: ACF50455.1 .
RefSeqi YP_002027138.1. NC_011071.1.

3D structure databases

ProteinModelPortali B4SKV7.
SMRi B4SKV7. Positions 909-1129.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 391008.Smal_0750.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ACF50455 ; ACF50455 ; Smal_0750 .
GeneIDi 6477853.
KEGGi smt:Smal_0750.
PATRICi 23706354. VBISteMal40512_0764.

Phylogenomic databases

eggNOGi COG0086.
HOGENOMi HOG000218386.
KOi K03046.
OMAi AYDSEFL.
OrthoDBi EOG6M9DS6.

Enzyme and pathway databases

BioCyci SMAL391008:GH1H-768-MONOMER.

Family and domain databases

HAMAPi MF_01322. RNApol_bact_RpoC.
InterProi IPR012754. DNA-dir_RpoC_beta_prime.
IPR000722. RNA_pol_asu.
IPR006592. RNA_pol_N.
IPR007080. RNA_pol_Rpb1_1.
IPR007066. RNA_pol_Rpb1_3.
IPR007083. RNA_pol_Rpb1_4.
IPR007081. RNA_pol_Rpb1_5.
[Graphical view ]
Pfami PF04997. RNA_pol_Rpb1_1. 1 hit.
PF00623. RNA_pol_Rpb1_2. 1 hit.
PF04983. RNA_pol_Rpb1_3. 1 hit.
PF05000. RNA_pol_Rpb1_4. 1 hit.
PF04998. RNA_pol_Rpb1_5. 1 hit.
[Graphical view ]
SMARTi SM00663. RPOLA_N. 1 hit.
[Graphical view ]
TIGRFAMsi TIGR02386. rpoC_TIGR. 1 hit.
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: R551-3Imported.

Entry informationi

Entry nameiB4SKV7_STRM5
AccessioniPrimary (citable) accession number: B4SKV7
Entry historyi
Integrated into UniProtKB/TrEMBL: September 23, 2008
Last sequence update: September 23, 2008
Last modified: May 14, 2014
This is version 45 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

Similar proteinsi