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B4SKV7 (B4SKV7_STRM5) Unreviewed, UniProtKB/TrEMBL

Last modified February 19, 2014. Version 44. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
DNA-directed RNA polymerase subunit beta' HAMAP-Rule MF_01322

Short name=RNAP subunit beta' HAMAP-Rule MF_01322
EC=2.7.7.6 HAMAP-Rule MF_01322
Alternative name(s):
RNA polymerase subunit beta' HAMAP-Rule MF_01322
Transcriptase subunit beta' HAMAP-Rule MF_01322
Gene names
Name:rpoC HAMAP-Rule MF_01322
Ordered Locus Names:Smal_0750 EMBL ACF50455.1
OrganismStenotrophomonas maltophilia (strain R551-3) [Complete proteome] [HAMAP] EMBL ACF50455.1
Taxonomic identifier391008 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaXanthomonadalesXanthomonadaceaeStenotrophomonasStenotrophomonas maltophilia group

Protein attributes

Sequence length1407 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates By similarity. HAMAP-Rule MF_01322

Catalytic activity

Nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). RuleBase RU004279 HAMAP-Rule MF_01322 SAAS SAAS012754

Subunit structure

The RNAP catalytic core consists of 2 alpha, 1 beta, 1 beta' and 1 omega subunit. When a sigma factor is associated with the core the holoenzyme is formed, which can initiate transcription By similarity. HAMAP-Rule MF_01322

Sequence similarities

Belongs to the RNA polymerase beta' chain family. RuleBase RU004279 HAMAP-Rule MF_01322

Sequences

Sequence LengthMass (Da)Tools
B4SKV7 [UniParc].

Last modified September 23, 2008. Version 1.
Checksum: 296791D1CB130791

FASTA1,407155,452
        10         20         30         40         50         60 
MKDLLNLFNQ QRQTLDFDAI KIALASPDLI RSWSFGEVKK PETINYRTFK PERDGLFCAA 

        70         80         90        100        110        120 
IFGPVKDYEC LCGKYKRMKH RGVVCEKCGT EVTLAKVRRE RMGHIDLASP VAHIWFLKSL 

       130        140        150        160        170        180 
PSRIGLMLDM TLRDIERVLY FEAYVVTEPG LTALERRQLL TEEQYLQARQ EHGDDFDAAM 

       190        200        210        220        230        240 
GAEAVYELLR TIDLQSEMTR LREEIASTGS ETKLKRLTKR IKLIEAFLES GNRPEWMVMT 

       250        260        270        280        290        300 
VLPVLPPDLR PLVPLDGGRF ATSDLNDLYR RVINRNNRLR RLLELSAPDI IVRNEKRMLQ 

       310        320        330        340        350        360 
ESVDALLDNG RRGRAITGTN KRPLKSLADM IKGKQGRFRQ NLLGKRVDYS GRSVIVVGPY 

       370        380        390        400        410        420 
LRLHQCGLPK KMALELFKPF VFAKLQRRGL ATTIKAAKKL VEREEAEVWD ILEEVIREHP 

       430        440        450        460        470        480 
VMLNRAPTLH RLGIQAFEPV LIEGKAIQLH PLVCTAFNAD FDGDQMAVHV PLSLEAQLEA 

       490        500        510        520        530        540 
RALMMSTNNI LSPANGEPII VPSQDVVLGL YYMTRSLENK KGEGMAFANI AEVKRAYDNR 

       550        560        570        580        590        600 
VVELHARVKV RITEVVTDED GIKQNKTSIV DTTIGRALLA EILPEGLPFA LANTELTKKN 

       610        620        630        640        650        660 
ISRLINSSYR QLGLKDTVVF ADKLMYTGFA YATRAGVSIG IDDMLIPDEK KGILTEAEAE 

       670        680        690        700        710        720 
VLEIQEQYQS GLVTAGERYN KVVDIWSRTN ERIAKAMMDT IGTEKVVNAK GETIDQKSMN 

       730        740        750        760        770        780 
SLYIMADSGA RGSQAQIRQL AGMRGLMARP DGSIIETPIK ANFREGLNVQ EYFNSTHGAR 

       790        800        810        820        830        840 
KGLADTALKT ANSGYLTRRL VDVAQDVVIT EVDCGTTEGL IMTPIVEGGD VVEPLKDRVL 

       850        860        870        880        890        900 
GRVVAEDVFL PGNDEDPIVT RNTLLDEAWV AKLEDAGVQT IKVRSTISCE SAFGVCGRCY 

       910        920        930        940        950        960 
GRDLARGHIV NIGEAVGVIA AQSIGEPGTQ LTMRTFHIGG AASRAAAVDN ITVKTTGSVK 

       970        980        990       1000       1010       1020 
FSNLKSVEHA NGSLVAVSRS GEISVLDAHG RERERYKLPY GSMIASKDGD AVKAGQTVAN 

      1030       1040       1050       1060       1070       1080 
WDPHNHPIVS EVAGFIRFID FIDGVTVIEK TDELTGLASR EITDPKRRGA QAKDLRPIVR 

      1090       1100       1110       1120       1130       1140 
IVDAKGNDLT IPGTDLPAQY LLPPRSIVNL QDGAAVGVGD VVAKIPQEAS KTRDITGGLP 

      1150       1160       1170       1180       1190       1200 
RVADLFEARK PKDPAVLAER SGIISFGKDT KGKQRLIIKD TDGSEHEELI PKYRQVIVFE 

      1210       1220       1230       1240       1250       1260 
GEHVTKGETI VDGEPSPQDI LRLLGVEPLA AYLVKEIQDV YRLQGVKIND KHIEVITRQM 

      1270       1280       1290       1300       1310       1320 
LRKVEITDQG SSKFLNGEQV ERQRVIEENA RLGARNELIA RFDPVLLGIT KASLATESFI 

      1330       1340       1350       1360       1370       1380 
SAASFQETTR VLTEAAVRGT KDNLRGLKEN VIVGRLIPAG TGLSYHSNRR RGASGLTESE 

      1390       1400 
MQTLSGTPAV VEAPAVEAET EQASGEE 

« Hide

References

[1]"Complete sequence of Stenotrophomonas maltophilia R551-3."
US DOE Joint Genome Institute
Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Lang D., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N. expand/collapse author list , Taghavi S., Monchy S., Newman L., Vangronsveld J., van der Lelie D., Richardson P.
Submitted (JUN-2008) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: R551-3 EMBL ACF50455.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP001111 Genomic DNA. Translation: ACF50455.1.
RefSeqYP_002027138.1. NC_011071.1.

3D structure databases

ProteinModelPortalB4SKV7.
SMRB4SKV7. Positions 909-1129.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING391008.Smal_0750.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACF50455; ACF50455; Smal_0750.
GeneID6477853.
KEGGsmt:Smal_0750.
PATRIC23706354. VBISteMal40512_0764.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0086.
HOGENOMHOG000218386.
KOK03046.
OMAIYFAAYM.
OrthoDBEOG6M9DS6.
ProtClustDBPRK00566.

Enzyme and pathway databases

BioCycSMAL391008:GH1H-768-MONOMER.

Family and domain databases

HAMAPMF_01322. RNApol_bact_RpoC.
InterProIPR012754. DNA-dir_RpoC_beta_prime.
IPR000722. RNA_pol_asu.
IPR006592. RNA_pol_N.
IPR007080. RNA_pol_Rpb1_1.
IPR007066. RNA_pol_Rpb1_3.
IPR007083. RNA_pol_Rpb1_4.
IPR007081. RNA_pol_Rpb1_5.
[Graphical view]
PfamPF04997. RNA_pol_Rpb1_1. 1 hit.
PF00623. RNA_pol_Rpb1_2. 1 hit.
PF04983. RNA_pol_Rpb1_3. 1 hit.
PF05000. RNA_pol_Rpb1_4. 1 hit.
PF04998. RNA_pol_Rpb1_5. 1 hit.
[Graphical view]
SMARTSM00663. RPOLA_N. 1 hit.
[Graphical view]
TIGRFAMsTIGR02386. rpoC_TIGR. 1 hit.
ProtoNetSearch...

Entry information

Entry nameB4SKV7_STRM5
AccessionPrimary (citable) accession number: B4SKV7
Entry history
Integrated into UniProtKB/TrEMBL: September 23, 2008
Last sequence update: September 23, 2008
Last modified: February 19, 2014
This is version 44 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)