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Protein

DNA-directed RNA polymerase subunit beta'

Gene

rpoC

Organism
Stenotrophomonas maltophilia (strain R551-3)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.UniRule annotationSAAS annotation

Catalytic activityi

Nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1).UniRule annotationSAAS annotation

GO - Molecular functioni

  1. DNA binding Source: UniProtKB-HAMAP
  2. DNA-directed RNA polymerase activity Source: UniProtKB-HAMAP

GO - Biological processi

  1. transcription, DNA-templated Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

NucleotidyltransferaseUniRule annotation, Transferase

Keywords - Biological processi

Transcription

Enzyme and pathway databases

BioCyciSMAL391008:GH1H-768-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
DNA-directed RNA polymerase subunit beta'UniRule annotation (EC:2.7.7.6UniRule annotation)
Short name:
RNAP subunit beta'UniRule annotation
Alternative name(s):
RNA polymerase subunit beta'UniRule annotation
Transcriptase subunit beta'UniRule annotation
Gene namesi
Name:rpoCUniRule annotation
Ordered Locus Names:Smal_0750Imported
OrganismiStenotrophomonas maltophilia (strain R551-3)Imported
Taxonomic identifieri391008 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaXanthomonadalesXanthomonadaceaeStenotrophomonasStenotrophomonas maltophilia group
ProteomesiUP000001867 Componenti: Chromosome

Subcellular locationi

Keywords - Cellular componenti

DNA-directed RNA polymeraseUniRule annotation

Interactioni

Subunit structurei

The RNAP catalytic core consists of 2 alpha, 1 beta, 1 beta' and 1 omega subunit. When a sigma factor is associated with the core the holoenzyme is formed, which can initiate transcription.UniRule annotation

Protein-protein interaction databases

STRINGi391008.Smal_0750.

Structurei

3D structure databases

ProteinModelPortaliB4SKV7.
SMRiB4SKV7. Positions 909-1129.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the RNA polymerase beta' chain family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0086.
HOGENOMiHOG000218386.
KOiK03046.
OMAiDCGTERG.
OrthoDBiEOG6M9DS6.

Family and domain databases

HAMAPiMF_01322. RNApol_bact_RpoC.
InterProiIPR012754. DNA-dir_RpoC_beta_prime.
IPR000722. RNA_pol_asu.
IPR006592. RNA_pol_N.
IPR007080. RNA_pol_Rpb1_1.
IPR007066. RNA_pol_Rpb1_3.
IPR007083. RNA_pol_Rpb1_4.
IPR007081. RNA_pol_Rpb1_5.
[Graphical view]
PfamiPF04997. RNA_pol_Rpb1_1. 1 hit.
PF00623. RNA_pol_Rpb1_2. 1 hit.
PF04983. RNA_pol_Rpb1_3. 1 hit.
PF05000. RNA_pol_Rpb1_4. 1 hit.
PF04998. RNA_pol_Rpb1_5. 1 hit.
[Graphical view]
SMARTiSM00663. RPOLA_N. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02386. rpoC_TIGR. 1 hit.

Sequencei

Sequence statusi: Complete.

B4SKV7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKDLLNLFNQ QRQTLDFDAI KIALASPDLI RSWSFGEVKK PETINYRTFK
60 70 80 90 100
PERDGLFCAA IFGPVKDYEC LCGKYKRMKH RGVVCEKCGT EVTLAKVRRE
110 120 130 140 150
RMGHIDLASP VAHIWFLKSL PSRIGLMLDM TLRDIERVLY FEAYVVTEPG
160 170 180 190 200
LTALERRQLL TEEQYLQARQ EHGDDFDAAM GAEAVYELLR TIDLQSEMTR
210 220 230 240 250
LREEIASTGS ETKLKRLTKR IKLIEAFLES GNRPEWMVMT VLPVLPPDLR
260 270 280 290 300
PLVPLDGGRF ATSDLNDLYR RVINRNNRLR RLLELSAPDI IVRNEKRMLQ
310 320 330 340 350
ESVDALLDNG RRGRAITGTN KRPLKSLADM IKGKQGRFRQ NLLGKRVDYS
360 370 380 390 400
GRSVIVVGPY LRLHQCGLPK KMALELFKPF VFAKLQRRGL ATTIKAAKKL
410 420 430 440 450
VEREEAEVWD ILEEVIREHP VMLNRAPTLH RLGIQAFEPV LIEGKAIQLH
460 470 480 490 500
PLVCTAFNAD FDGDQMAVHV PLSLEAQLEA RALMMSTNNI LSPANGEPII
510 520 530 540 550
VPSQDVVLGL YYMTRSLENK KGEGMAFANI AEVKRAYDNR VVELHARVKV
560 570 580 590 600
RITEVVTDED GIKQNKTSIV DTTIGRALLA EILPEGLPFA LANTELTKKN
610 620 630 640 650
ISRLINSSYR QLGLKDTVVF ADKLMYTGFA YATRAGVSIG IDDMLIPDEK
660 670 680 690 700
KGILTEAEAE VLEIQEQYQS GLVTAGERYN KVVDIWSRTN ERIAKAMMDT
710 720 730 740 750
IGTEKVVNAK GETIDQKSMN SLYIMADSGA RGSQAQIRQL AGMRGLMARP
760 770 780 790 800
DGSIIETPIK ANFREGLNVQ EYFNSTHGAR KGLADTALKT ANSGYLTRRL
810 820 830 840 850
VDVAQDVVIT EVDCGTTEGL IMTPIVEGGD VVEPLKDRVL GRVVAEDVFL
860 870 880 890 900
PGNDEDPIVT RNTLLDEAWV AKLEDAGVQT IKVRSTISCE SAFGVCGRCY
910 920 930 940 950
GRDLARGHIV NIGEAVGVIA AQSIGEPGTQ LTMRTFHIGG AASRAAAVDN
960 970 980 990 1000
ITVKTTGSVK FSNLKSVEHA NGSLVAVSRS GEISVLDAHG RERERYKLPY
1010 1020 1030 1040 1050
GSMIASKDGD AVKAGQTVAN WDPHNHPIVS EVAGFIRFID FIDGVTVIEK
1060 1070 1080 1090 1100
TDELTGLASR EITDPKRRGA QAKDLRPIVR IVDAKGNDLT IPGTDLPAQY
1110 1120 1130 1140 1150
LLPPRSIVNL QDGAAVGVGD VVAKIPQEAS KTRDITGGLP RVADLFEARK
1160 1170 1180 1190 1200
PKDPAVLAER SGIISFGKDT KGKQRLIIKD TDGSEHEELI PKYRQVIVFE
1210 1220 1230 1240 1250
GEHVTKGETI VDGEPSPQDI LRLLGVEPLA AYLVKEIQDV YRLQGVKIND
1260 1270 1280 1290 1300
KHIEVITRQM LRKVEITDQG SSKFLNGEQV ERQRVIEENA RLGARNELIA
1310 1320 1330 1340 1350
RFDPVLLGIT KASLATESFI SAASFQETTR VLTEAAVRGT KDNLRGLKEN
1360 1370 1380 1390 1400
VIVGRLIPAG TGLSYHSNRR RGASGLTESE MQTLSGTPAV VEAPAVEAET

EQASGEE
Length:1,407
Mass (Da):155,452
Last modified:September 23, 2008 - v1
Checksum:i296791D1CB130791
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001111 Genomic DNA. Translation: ACF50455.1.
RefSeqiYP_002027138.1. NC_011071.1.

Genome annotation databases

EnsemblBacteriaiACF50455; ACF50455; Smal_0750.
KEGGismt:Smal_0750.
PATRICi23706354. VBISteMal40512_0764.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001111 Genomic DNA. Translation: ACF50455.1.
RefSeqiYP_002027138.1. NC_011071.1.

3D structure databases

ProteinModelPortaliB4SKV7.
SMRiB4SKV7. Positions 909-1129.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi391008.Smal_0750.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACF50455; ACF50455; Smal_0750.
KEGGismt:Smal_0750.
PATRICi23706354. VBISteMal40512_0764.

Phylogenomic databases

eggNOGiCOG0086.
HOGENOMiHOG000218386.
KOiK03046.
OMAiDCGTERG.
OrthoDBiEOG6M9DS6.

Enzyme and pathway databases

BioCyciSMAL391008:GH1H-768-MONOMER.

Family and domain databases

HAMAPiMF_01322. RNApol_bact_RpoC.
InterProiIPR012754. DNA-dir_RpoC_beta_prime.
IPR000722. RNA_pol_asu.
IPR006592. RNA_pol_N.
IPR007080. RNA_pol_Rpb1_1.
IPR007066. RNA_pol_Rpb1_3.
IPR007083. RNA_pol_Rpb1_4.
IPR007081. RNA_pol_Rpb1_5.
[Graphical view]
PfamiPF04997. RNA_pol_Rpb1_1. 1 hit.
PF00623. RNA_pol_Rpb1_2. 1 hit.
PF04983. RNA_pol_Rpb1_3. 1 hit.
PF05000. RNA_pol_Rpb1_4. 1 hit.
PF04998. RNA_pol_Rpb1_5. 1 hit.
[Graphical view]
SMARTiSM00663. RPOLA_N. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02386. rpoC_TIGR. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: R551-3Imported.

Entry informationi

Entry nameiB4SKV7_STRM5
AccessioniPrimary (citable) accession number: B4SKV7
Entry historyi
Integrated into UniProtKB/TrEMBL: September 23, 2008
Last sequence update: September 23, 2008
Last modified: April 1, 2015
This is version 50 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.