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B4SJL6 (B4SJL6_STRM5) Unreviewed, UniProtKB/TrEMBL

Last modified December 14, 2011. Version 17. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
Heparinase II/III family protein EMBL ACF51771.1
Gene names
Ordered Locus Names:Smal_2067
OrganismStenotrophomonas maltophilia (strain R551-3) [Complete proteome] [HAMAP] EMBL ACF51771.1
Taxonomic identifier391008 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Gammaproteobacteria › Xanthomonadales › Xanthomonadaceae › Stenotrophomonas › Stenotrophomonas maltophilia group

Protein attributes

Sequence length744 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existencePredicted

Ontologies

Keywords
   DomainSignal EMBL ACF51771.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological processalginic acid catabolic process

Inferred from electronic annotation. Source: InterPro

   Cellular componentperiplasmic space

Inferred from electronic annotation. Source: InterPro

   Molecular functionpoly(beta-D-mannuronate) lyase activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Signal peptide1 – 2929 Potential EMBL ACF51771.1
Chain30 – 744715 Potential EMBL ACF51771.1
PRO_5000388952

Sequences

Sequence LengthMass (Da)Tools
B4SJL6 [UniParc].

Last modified September 23, 2008. Version 1.
Checksum: 30F2A485704938C1

FASTA74482,615
        10         20         30         40         50         60 
MRLQPLSVSL VLALAVPFAL LPAAPLLAAP AAATRQADTE PVLVTATQWQ QMASEGSRYP 

        70         80         90        100        110        120 
WFAKEQARTQ KTLQKMMKAG IDVPVPKDKG GGRTHEQHKR NYQALLAAGT LYRLTGDKAY 

       130        140        150        160        170        180 
ADYARDMLLQ YAKLYPTLGP HPEGRGQIPG RVFWQVLNDS VWLVNAIQGY DAIRDALSAE 

       190        200        210        220        230        240 
DRNTIESKVL RPMAEFLVSE PKNYDQIHNH ATWAVAATGM TGYVLRDPEL VEKSLRGSQK 

       250        260        270        280        290        300 
NDQFGFLRQI DLLFSPDGYY EEGPYYQRYA LAPFLLFANA IERNEPQRKI FQRRDGVLLK 

       310        320        330        340        350        360 
AVDVLVQTSY GGLLFPINDA ILDKGIDTEE LVAGIGIAYA RTGDDRLLSV AQQQKRLLLS 

       370        380        390        400        410        420 
PEGLQVAQAL AANKAKPFDY RPMLLRDGPD GDRGGLAILR MNGERGQALV QKDTMQGMGH 

       430        440        450        460        470        480 
GHFDKLNWLF YDNGNPVVTD YGAARFLNVE AKRGGIYLAE NRSWAKQTVA HNTLVVDEQS 

       490        500        510        520        530        540 
HFKGDWKRGE EHAPQVRFFQ ADADTQVASA TMRDAYPGVV FTRTQALLRH PDLGLPVVLD 

       550        560        570        580        590        600 
LLQVHGDKAA RYDLPLHFNG HIVTTGFEAE HFPTQRPVLG KDNGYQHLWL DARSTPGSES 

       610        620        630        640        650        660 
RSLAWLLDGR FYTYRFGSSA PAQALLVESG ANDPEFNLRR EPALLQRVEG QKDVTFFSVL 

       670        680        690        700        710        720 
EPHGEYNGTA EYVHGADSRI KDIVRSRGSD AEVIELRLAS GARIALGVAD DSSAKGEHSV 

       730        740 
TVDGHAYRWS GSHARMDRSK GDGK

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References

[1]"Complete sequence of Stenotrophomonas maltophilia R551-3."
Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Lang D., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N. expand/collapse author list , Taghavi S., Monchy S., Newman L., Vangronsveld J., van der Lelie D., Richardson P.
Submitted (JUN-2008) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: R551-3.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP001111 Genomic DNA. Translation: ACF51771.1.
RefSeqYP_002028454.1. NC_011071.1.

3D structure databases

ModBaseSearch...

Protein-protein interaction databases

STRINGB4SJL6.

Protein family/group databases

CAZyPL17. Polysaccharide Lyase Family 17.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID6476245.
GenomeReviewsGene locus Smal_2067 in contig CP001111_GR.
KEGGsmt:Smal_2067.
PATRIC23709073. VBISteMal40512_2089.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHBG742331.
OMANGYQHLW.
ProtClustDBCLSK769500.

Family and domain databases

InterProIPR008397. Alginate_lyase_dom.
IPR008929. Chondroitin_lyas.
IPR012480. Hepar_II_III.
[Graphical view]
Gene3DG3DSA:1.50.10.110. Alginate_lyase. 1 hit.
PfamPF05426. Alginate_lyase. 1 hit.
PF07940. Hepar_II_III. 1 hit.
[Graphical view]
SUPFAMSSF48230. Chondroitin_lyas. 1 hit.
ProtoNetSearch...

Entry information

Entry nameB4SJL6_STRM5
AccessionPrimary (citable) accession number: B4SJL6
Entry history
Integrated into UniProtKB/TrEMBL: September 23, 2008
Last sequence update: September 23, 2008
Last modified: December 14, 2011
This is version 17 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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