B4SGX2 (B4SGX2_PELPB) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
2-dehydro-3-deoxyphosphooctonate aldolase EMBL ACF44960.1

Gene names

Ordered Locus Names:

Ppha_2811

Organism

Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) [Complete proteome] [HAMAP]

Taxonomic identifier

324925 [NCBI]

Taxonomic lineage

Bacteria › Chlorobi › Chlorobia › Chlorobiales › Chlorobiaceae › Chlorobium/Pelodictyon group › Pelodictyon

Protein attributes

Sequence length	276 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Catalytic activity	Phosphoenolpyruvate + D-arabinose 5-phosphate + H2O = 2-dehydro-3-deoxy-D-octonate 8-phosphate + phosphate. SAAS SAAS006269
Pathway	Bacterial outer membrane biogenesis; lipopolysaccharide biosynthesis. SAAS SAAS006269 Carbohydrate biosynthesis; 3-deoxy-D-manno-octulosonate biosynthesis; 3-deoxy-D-manno-octulosonate from D-ribulose 5-phosphate: step 2/3. SAAS SAAS006269
Subcellular location	Cytoplasm By similarity SAAS SAAS006269.

Ontologies

Keywords
Biological process	Lipopolysaccharide biosynthesis SAAS SAAS006269
Cellular component	Cytoplasm SAAS SAAS006269
Molecular function	Transferase SAAS SAAS006269
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	lipopolysaccharide biosynthetic process Inferred from electronic annotation. Source: UniProtKB-KW
Cellular component	cytoplasm Inferred from electronic annotation. Source: UniProtKB-SubCell
Molecular function	3-deoxy-8-phosphooctulonate synthase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	B4SGX2 [UniParc]. Last modified September 23, 2008. Version 1. Checksum: 5CEB11CFE51E2A39	FASTA	276	29,920
	10 20 30 40 50 60 MEKFSIGSLS LPDDNMPLFI AGPCLIESRA MALQTADELQ RISREQGVHF IFKGSYRKAN 70 80 90 100 110 120 RTSGRSFTGI GDIEALEVLA EIRQDYGMPV ITDVHETKEV ALAARYVDVL QIPAFLCRQT 130 140 150 160 170 180 ELLVAAGESG LAVNIKKGQF MAPEDMALAA AKVVETGNKR VMLTERGSSF GYHNLVVDFR 190 200 210 220 230 240 GLAKMAESGY PVLYDATHSL QLPAAGQGVS GGERQYVLPL ARAAVAAGVN GLFFEIHPDP 250 260 270 SKALSDAATQ IPLADFSTMV KQLLHLYRCV HALHSL

References

[1]

"Complete sequence of Pelodictyon phaeoclathratiforme BU-1." Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Liu Z., Li T., Zhao F. , Overmann J., Bryant D.A., Richardson P. Submitted (JUN-2008) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: DSM 5477 / BU-1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001110 Genomic DNA. Translation: ACF44960.1.
RefSeq	YP_002019577.1. NC_011060.1.
3D structure databases
ProteinModelPortal	B4SGX2.
ModBase	Search...
Protein-protein interaction databases
STRING	B4SGX2.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	6463819.
GenomeReviews	Gene locus Ppha_2811 in contig CP001110_GR.
KEGG	pph:Ppha_2811.
PATRIC	22906479. VBIPelPha134556_2995.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HBG575990.
OMA	RVMLTER.
ProtClustDB	PRK05198.
Family and domain databases
InterPro	IPR013785. Aldolase_TIM. IPR006218. DAHP1/KDSA. IPR006269. KDO8P_synthase. [Graphical view]
Gene3D	G3DSA:3.20.20.70. Aldolase_TIM. 1 hit.
KO	K01627.
PANTHER	PTHR21057:SF2. KDO8P_synthase. 1 hit.
Pfam	PF00793. DAHP_synth_1. 1 hit. [Graphical view]
TIGRFAMs	TIGR01362. KDO8P_synth. 1 hit.
ProtoNet	Search...

Entry information

Entry name

B4SGX2_PELPB

Accession

Primary (citable) accession number: B4SGX2

Entry history

Integrated into UniProtKB/TrEMBL:	September 23, 2008
Last sequence update:	September 23, 2008
Last modified:	December 14, 2011
This is version 23 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)