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B4SFD7 (B4SFD7_PELPB) Unreviewed, UniProtKB/TrEMBL

Last modified January 25, 2012. Version 30. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Alanine racemase HAMAP MF_01201
EC=5.1.1.1 HAMAP MF_01201
Gene names
Name:alr HAMAP MF_01201
Ordered Locus Names:Ppha_2554
OrganismPelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) [Complete proteome] [HAMAP]
Taxonomic identifier324925 [NCBI]
Taxonomic lineageBacteria › Chlorobi › Chlorobia › Chlorobiales › Chlorobiaceae › Chlorobium/Pelodictyon group › Pelodictyon

Protein attributes

Sequence length365 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Provides the D-alanine required for cell wall biosynthesis By similarity. HAMAP MF_01201

Catalytic activity

L-alanine = D-alanine. HAMAP MF_01201

Cofactor

Pyridoxal phosphate By similarity. HAMAP MF_01201 SAAS SAAS009006

Pathway

Amino-acid biosynthesis; D-alanine biosynthesis; D-alanine from L-alanine: step 1/1. HAMAP MF_01201

Cell wall biogenesis; peptidoglycan biosynthesis. HAMAP MF_01201

Sequence similarities

Belongs to the alanine racemase family. HAMAP MF_01201 RuleBase RU004188

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Active site331Proton acceptor; specific for D-alanine By similarity HAMAP MF_01201
Active site2611Proton acceptor; specific for L-alanine By similarity HAMAP MF_01201

Amino acid modifications

Modified residue331N6-(pyridoxal phosphate)lysine By similarity HAMAP MF_01201

Sequences

Sequence LengthMass (Da)Tools
B4SFD7 [UniParc].

Last modified September 23, 2008. Version 1.
Checksum: 5FDDC2DACFF25311

FASTA36539,436
        10         20         30         40         50         60 
MTEALVSLDN LAWNTSLIRK RVGGSARIMG IVKANAYGHN VHRVAETLEK SGVRDFGVAN 

        70         80         90        100        110        120 
IHEAIELKTG GALKKPANIL AFSSPLPSHI PFFLHHDIEM TLCDSLTLQS AEEIAAAENK 

       130        140        150        160        170        180 
TIAVQLKVDT GMGRLGTPPA VAMELLRQID HSPHLELKGI YTHFADSSTA EGTTKQLDAF 

       190        200        210        220        230        240 
KTLTAEYEHA SSKTVCKHAA NSGAILSAPE SWLDMVRPGI LLYGYHPTKN SPCRLDVRPV 

       250        260        270        280        290        300 
MQFEAKVIFV KKVPAGTTIS YNRTWTANEP RSIATIAAGY ADGYTRALSG RATVMINGNT 

       310        320        330        340        350        360 
YPQVGIVTMD QIMVDLGTRH DVKTGDTATL FGWEGIGADS LAGLAGTISY EMLCSVSARV 


KRIFI

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References

[1]"Complete sequence of Pelodictyon phaeoclathratiforme BU-1."
Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Liu Z., Li T., Zhao F. expand/collapse author list , Overmann J., Bryant D.A., Richardson P.
Submitted (JUN-2008) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: DSM 5477 / BU-1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP001110 Genomic DNA. Translation: ACF44716.1.
RefSeqYP_002019333.1. NC_011060.1.

3D structure databases

ProteinModelPortalB4SFD7.
ModBaseSearch...

Protein-protein interaction databases

STRINGB4SFD7.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID6463713.
GenomeReviewsGene locus Ppha_2554 in contig CP001110_GR.
KEGGpph:Ppha_2554.
PATRIC22905921. VBIPelPha134556_2724.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHBG712172.
OMAEGTPVWV.
ProtClustDBCLSK637997.

Family and domain databases

HAMAPMF_01201. Ala_racemase.
[Tree]
InterProIPR000821. Ala_racemase.
IPR009006. Ala_racemase/Decarboxylase_C.
IPR011079. Ala_racemase_C.
IPR001608. Ala_racemase_N.
[Graphical view]
Gene3DG3DSA:2.40.37.10. Ala_racemase/Decarboxylase_C. 1 hit.
KOK01775.
PfamPF00842. Ala_racemase_C. 1 hit.
PF01168. Ala_racemase_N. 1 hit.
[Graphical view]
PRINTSPR00992. ALARACEMASE.
SMARTSM01005. Ala_racemase_C. 1 hit.
[Graphical view]
SUPFAMSSF50621. Racem_decarbox_C. 1 hit.
TIGRFAMsTIGR00492. Alr. 1 hit.
ProtoNetSearch...

Entry information

Entry nameB4SFD7_PELPB
AccessionPrimary (citable) accession number: B4SFD7
Entry history
Integrated into UniProtKB/TrEMBL: September 23, 2008
Last sequence update: September 23, 2008
Last modified: January 25, 2012
This is version 30 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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