B4SF01 (B4SF01_PELPB) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
Probable pyruvoyl-dependent arginine decarboxylase 1 HAMAP MF_01404
Short name=PvlArgDC 1 HAMAP MF_01404
EC=4.1.1.19 HAMAP MF_01404

Gene names

Name:	pdaD1 HAMAP MF_01404
Ordered Locus Names:	Ppha_0860

Organism

Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) [Complete proteome] [HAMAP]

Taxonomic identifier

324925 [NCBI]

Taxonomic lineage

Bacteria › Chlorobi › Chlorobia › Chlorobiales › Chlorobiaceae › Chlorobium/Pelodictyon group › Pelodictyon

Protein attributes

Sequence length	181 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Catalytic activity	L-arginine = agmatine + CO2. HAMAP MF_01404
Cofactor	Pyruvoyl group By similarity. HAMAP MF_01404
Sequence similarities	Belongs to the pdaD family. HAMAP MF_01404

Ontologies

Keywords
Ligand	Pyruvate HAMAP MF_01404
Molecular function	Decarboxylase HAMAP MF_01404 Lyase
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	arginine catabolic process Inferred from electronic annotation. Source: InterPro
Molecular function	arginine decarboxylase activity Inferred from electronic annotation. Source: HAMAP
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Sites
	Site	42 – 43	2	Cleavage (non-hydrolytic) By similarity HAMAP MF_01404
Amino acid modifications
	Modified residue	43	1	Pyruvic acid (Ser) By similarity HAMAP MF_01404

Sequences

	Sequence		Length	Mass (Da)
	B4SF01 [UniParc]. Last modified September 23, 2008. Version 1. Checksum: 1B7DB1D57D029299	FASTA	181	19,932
	10 20 30 40 50 60 MSFVPSKVFF TKGVGRHKEY LSSFELALRE AKIEKCNLVT VSSIFPPHCE RISVEEGVKL 70 80 90 100 110 120 LSPGQITFAV MARNSTNEFN RLIAASVGVA IPADDTQYGY LSEHHPFGES AEQSGEYAED 130 140 150 160 170 180 LAATMLATTL GIEFDPNKDW DEREGIYKMS GKIINSYNIT ETAEGENGLW TTVISCAVLL P

References

[1]

"Complete sequence of Pelodictyon phaeoclathratiforme BU-1." Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Liu Z., Li T., Zhao F. , Overmann J., Bryant D.A., Richardson P. Submitted (JUN-2008) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: DSM 5477 / BU-1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001110 Genomic DNA. Translation: ACF43148.1.
RefSeq	YP_002017765.1. NC_011060.1.
3D structure databases
ModBase	Search...
Protein-protein interaction databases
STRING	B4SF01.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	6461113.
GenomeReviews	Gene locus Ppha_0860 in contig CP001110_GR.
KEGG	pph:Ppha_0860.
PATRIC	22902196. VBIPelPha134556_0885.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HBG539680.
OMA	YKMSGKI.
ProtClustDB	PRK01285.
Family and domain databases
HAMAP	MF_01404. PvlArgDC. [Tree]
InterPro	IPR016104. Pyr-dep_his/arg-deCO2ase. IPR016105. Pyr-dep_his/arg-deCO2ase_sand. IPR002724. Pyruvoyl-dep_arg_deCO2ase. [Graphical view]
Gene3D	G3DSA:3.50.20.10. Pyr-dep_his/arg-deCO2ase_sand. 1 hit.
KO	K02626.
Pfam	PF01862. PvlArgDC. 1 hit. [Graphical view]
PIRSF	PIRSF005216. Pyruvoyl-dep_arg_deCO2ase. 1 hit.
ProDom	PD010449. Pyruvoyl-dep_arg_deCO2ase. 1 hit. [Graphical view] [Entries sharing at least one domain]
SUPFAM	SSF56271. His_carbxylase. 1 hit.
TIGRFAMs	TIGR00286. TIGR00286. 1 hit.
ProtoNet	Search...

Entry information

Entry name

B4SF01_PELPB

Accession

Primary (citable) accession number: B4SF01

Entry history

Integrated into UniProtKB/TrEMBL:	September 23, 2008
Last sequence update:	September 23, 2008
Last modified:	December 14, 2011
This is version 18 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)