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B4S6J7

- PDAD_PROA2

UniProt

B4S6J7 - PDAD_PROA2

Protein

Probable pyruvoyl-dependent arginine decarboxylase

Gene

pdaD

Organism
Prosthecochloris aestuarii (strain DSM 271 / SK 413)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 36 (01 Oct 2014)
      Sequence version 1 (23 Sep 2008)
      Previous versions | rss
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    Functioni

    Catalytic activityi

    L-arginine = agmatine + CO2.UniRule annotation

    Cofactori

    Pyruvoyl group.UniRule annotation

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Sitei42 – 432Cleavage (non-hydrolytic)UniRule annotation

    GO - Molecular functioni

    1. arginine decarboxylase activity Source: UniProtKB-HAMAP

    GO - Biological processi

    1. arginine catabolic process Source: InterPro

    Keywords - Molecular functioni

    Decarboxylase, Lyase

    Keywords - Ligandi

    Pyruvate

    Enzyme and pathway databases

    BioCyciPAES290512:GHUT-729-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Probable pyruvoyl-dependent arginine decarboxylaseUniRule annotation (EC:4.1.1.19UniRule annotation)
    Short name:
    PvlArgDCUniRule annotation
    Cleaved into the following 2 chains:
    Pyruvoyl-dependent arginine decarboxylase subunit betaUniRule annotation
    Pyruvoyl-dependent arginine decarboxylase subunit alphaUniRule annotation
    Gene namesi
    Name:pdaDUniRule annotation
    Ordered Locus Names:Paes_0705
    OrganismiProsthecochloris aestuarii (strain DSM 271 / SK 413)
    Taxonomic identifieri290512 [NCBI]
    Taxonomic lineageiBacteriaChlorobiChlorobiaChlorobialesChlorobiaceaeProsthecochloris
    ProteomesiUP000002725: Chromosome

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 4242Pyruvoyl-dependent arginine decarboxylase subunit betaUniRule annotationPRO_1000145474Add
    BLAST
    Chaini43 – 181139Pyruvoyl-dependent arginine decarboxylase subunit alphaUniRule annotationPRO_1000145475Add
    BLAST

    Amino acid modifications

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Modified residuei43 – 431Pyruvic acid (Ser)UniRule annotation

    Interactioni

    Protein-protein interaction databases

    STRINGi290512.Paes_0705.

    Structurei

    3D structure databases

    ProteinModelPortaliB4S6J7.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the PdaD family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG1945.
    HOGENOMiHOG000012204.
    KOiK02626.
    OMAiYKMSGKI.
    OrthoDBiEOG6JHRMR.

    Family and domain databases

    Gene3Di3.50.20.10. 1 hit.
    HAMAPiMF_01404. PvlArgDC.
    InterProiIPR016104. Pyr-dep_his/arg-deCO2ase.
    IPR016105. Pyr-dep_his/arg-deCO2ase_sand.
    IPR002724. Pyruvoyl-dep_arg_deCO2ase.
    [Graphical view]
    PfamiPF01862. PvlArgDC. 1 hit.
    [Graphical view]
    PIRSFiPIRSF005216. Pyruvoyl-dep_arg_deCO2ase. 1 hit.
    ProDomiPD010449. Pyruvoyl-dep_arg_deCO2ase. 1 hit.
    [Graphical view] [Entries sharing at least one domain]
    SUPFAMiSSF56271. SSF56271. 1 hit.
    TIGRFAMsiTIGR00286. TIGR00286. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    Sequence processingi: The displayed sequence is further processed into a mature form.

    B4S6J7-1 [UniParc]FASTAAdd to Basket

    « Hide

    MSFVPTKVFF TKGVGRHKEY LSSFELALRE AKIEKCNLVT VSSIFPPQCE    50
    RISVEEGLKS LSPGEITFAV MARNSTNEHG RLIASSIGVA LPADESVYGY 100
    LSEHHPYGQT EEQSGEYAED LAATMLATTL GIEFDPNKDW DEREGIYKMS 150
    GKIINSFNIT QSAEGQNGLW TTVIACAVLL P 181
    Length:181
    Mass (Da):19,898
    Last modified:September 23, 2008 - v1
    Checksum:i968B05A7649D11F7
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001108 Genomic DNA. Translation: ACF45752.1.
    RefSeqiYP_002015399.1. NC_011059.1.

    Genome annotation databases

    EnsemblBacteriaiACF45752; ACF45752; Paes_0705.
    GeneIDi6458504.
    KEGGipaa:Paes_0705.
    PATRICi23041096. VBIProAes37017_0736.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001108 Genomic DNA. Translation: ACF45752.1 .
    RefSeqi YP_002015399.1. NC_011059.1.

    3D structure databases

    ProteinModelPortali B4S6J7.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 290512.Paes_0705.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ACF45752 ; ACF45752 ; Paes_0705 .
    GeneIDi 6458504.
    KEGGi paa:Paes_0705.
    PATRICi 23041096. VBIProAes37017_0736.

    Phylogenomic databases

    eggNOGi COG1945.
    HOGENOMi HOG000012204.
    KOi K02626.
    OMAi YKMSGKI.
    OrthoDBi EOG6JHRMR.

    Enzyme and pathway databases

    BioCyci PAES290512:GHUT-729-MONOMER.

    Family and domain databases

    Gene3Di 3.50.20.10. 1 hit.
    HAMAPi MF_01404. PvlArgDC.
    InterProi IPR016104. Pyr-dep_his/arg-deCO2ase.
    IPR016105. Pyr-dep_his/arg-deCO2ase_sand.
    IPR002724. Pyruvoyl-dep_arg_deCO2ase.
    [Graphical view ]
    Pfami PF01862. PvlArgDC. 1 hit.
    [Graphical view ]
    PIRSFi PIRSF005216. Pyruvoyl-dep_arg_deCO2ase. 1 hit.
    ProDomi PD010449. Pyruvoyl-dep_arg_deCO2ase. 1 hit.
    [Graphical view ] [Entries sharing at least one domain ]
    SUPFAMi SSF56271. SSF56271. 1 hit.
    TIGRFAMsi TIGR00286. TIGR00286. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "Complete sequence of chromosome of Prosthecochloris aestuarii DSM 271."
      US DOE Joint Genome Institute
      Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Anderson I., Liu Z., Li T., Zhao F.
      , Overmann J., Bryant D.A., Richardson P.
      Submitted (JUN-2008) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: DSM 271 / SK 413.

    Entry informationi

    Entry nameiPDAD_PROA2
    AccessioniPrimary (citable) accession number: B4S6J7
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: April 14, 2009
    Last sequence update: September 23, 2008
    Last modified: October 1, 2014
    This is version 36 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3