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Protein

50S ribosomal protein L13

Gene

rplM

Organism
Prosthecochloris aestuarii (strain DSM 271 / SK 413)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L13UniRule annotation
Gene namesi
Name:rplMUniRule annotation
Ordered Locus Names:Paes_1812
OrganismiProsthecochloris aestuarii (strain DSM 271 / SK 413)
Taxonomic identifieri290512 [NCBI]
Taxonomic lineageiBacteriaChlorobiChlorobiaChlorobialesChlorobiaceaeProsthecochloris
Proteomesi
  • UP000002725 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_10001441641 – 14950S ribosomal protein L13Add BLAST149

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit.UniRule annotation

Protein-protein interaction databases

STRINGi290512.Paes_1812.

Structurei

3D structure databases

ProteinModelPortaliB4S432.
SMRiB4S432.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the universal ribosomal protein uL13 family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4108UM5. Bacteria.
COG0102. LUCA.
HOGENOMiHOG000225286.
KOiK02871.
OMAiVLMGKHK.
OrthoDBiPOG091H013T.

Family and domain databases

CDDicd00392. Ribosomal_L13. 1 hit.
Gene3Di3.90.1180.10. 1 hit.
HAMAPiMF_01366. Ribosomal_L13. 1 hit.
InterProiView protein in InterPro
IPR005822. Ribosomal_L13.
IPR005823. Ribosomal_L13_bac-type.
IPR036899. Ribosomal_L13_sf.
PANTHERiPTHR11545. PTHR11545. 1 hit.
PfamiView protein in Pfam
PF00572. Ribosomal_L13. 1 hit.
PIRSFiPIRSF002181. Ribosomal_L13. 1 hit.
SUPFAMiSSF52161. SSF52161. 1 hit.
TIGRFAMsiTIGR01066. rplM_bact. 1 hit.

Sequencei

Sequence statusi: Complete.

B4S432-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSNTLSFKTY SAKPGEVVRK WYIVDAEGKV LGRLASEIAK VLRGKHKAQF
60 70 80 90 100
TPHIDTGDFV IVTNAEKIGL SGKKMDQKTY FSHSNYPGGV RIDNVKDVLQ
110 120 130 140
KKPEQVIEKA VWGMLPHNNL GRQLFKKLKV YKGTEHPHAA QCPVEMNVN
Length:149
Mass (Da):16,746
Last modified:September 23, 2008 - v1
Checksum:i6D8905F29D44F668
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001108 Genomic DNA. Translation: ACF46824.1.
RefSeqiWP_012506357.1. NC_011059.1.

Genome annotation databases

EnsemblBacteriaiACF46824; ACF46824; Paes_1812.
KEGGipaa:Paes_1812.

Similar proteinsi

Entry informationi

Entry nameiRL13_PROA2
AccessioniPrimary (citable) accession number: B4S432
Entry historyiIntegrated into UniProtKB/Swiss-Prot: April 14, 2009
Last sequence update: September 23, 2008
Last modified: October 25, 2017
This is version 62 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Ribosomal proteins
    Ribosomal proteins families and list of entries
  2. SIMILARITY comments
    Index of protein domains and families