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Reviewed, UniProtKB/Swiss-Prot B4S0J5 (PSD_ALTMD)

Last modified November 3, 2009. Version 11. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data | Customize display text xml rdf/xml gff fasta
Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents

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Names and origin

Protein namesRecommended name:
    Phosphatidylserine decarboxylase proenzyme
    EC=4.1.1.65
Cleaved into the following 2 chains:
    1- Recommended name:
            Phosphatidylserine decarboxylase alpha chain
    2- Recommended name:
            Phosphatidylserine decarboxylase beta chain
Gene names
Name: psd
Ordered Locus Names: MADE_00549
OrganismAlteromonas macleodii (strain DSM 17117 / Deep ecotype) [Complete proteome] [HAMAP]
Taxonomic identifier314275 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Gammaproteobacteria › Alteromonadales › Alteromonadaceae › Alteromonas

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Protein attributes

Sequence length325 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existenceInferred from homology.

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General annotation (Comments)

Catalytic activity

Phosphatidyl-L-serine = phosphatidylethanolamine + CO2. HAMAP MF_00662

Cofactor

Pyruvoyl group By similarity.

Pathway

Phospholipid metabolism; phosphatidylethanolamine biosynthesis; phosphatidylethanolamine from CDP-diacylglycerol: step 2/2. HAMAP MF_00662

Sequence similarities

Belongs to the phosphatidylserine decarboxylase family. Type 1 subfamily.

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Ontologies

Keywords
   Biological processPhospholipid biosynthesis
   LigandPyruvate
   Molecular functionDecarboxylase
Lyase
   PTMZymogen
   Technical termComplete proteome
Gene Ontology (GO)
   Biological processphospholipid biosynthetic process

Inferred from electronic annotation. Source: HAMAP

   Molecular functionphosphatidylserine decarboxylase activity

Inferred from electronic annotation. Source: HAMAP

Complete GO annotation...

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Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 252252Phosphatidylserine decarboxylase beta chain By similarity
PRO_1000131334
Chain253 – 32573Phosphatidylserine decarboxylase alpha chain By similarity
PRO_1000131335

Sites

Site252 – 2532Cleavage (non-hydrolytic) By similarity

Amino acid modifications

Modified residue2531Pyruvic acid (Ser) By similarity

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Sequences

Sequence LengthMass (Da)Tools
B4S0J5-1 [UniParc].

Last modified September 23, 2008. Version 1.
Checksum: A075E6C94D907827

FASTA32535,872
        10         20         30         40         50         60 
MLDWLKVNLQ YVTPKHLLSR LVGKLAEAEM GSVTTFFIKL FIKQYNVDMT EALHEKPEHY 

        70         80         90        100        110        120 
RSFNKFFTRT LKPEARTIDE SDDVLIHAVD GTVSQFGDIR SDSIFQAKGH DFSLTTLLGG 

       130        140        150        160        170        180 
KPDVAAPFKN GKFATVYLAP RDYHRIHMPI EGTLTDMLYV PGELFSVNPL TAQNIPGLFA 

       190        200        210        220        230        240 
RNERVVALFD TPVGKMAMVL VGATIVASIE TVWAGTVTPP TGKTVQHWSY ETDSEAAVKL 

       250        260        270        280        290        300 
EKGAELGRFK LGSTIVVCFE KDMIDFEDIA PGMVTRLGEP MASKMSSQKA ITPEQTTETP 

       310        320 
VQASNEFDDN AGETKKDTPS EGADS

« Hide

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References

[1]"Comparative genomics of two ecotypes of the marine planktonic copiotroph Alteromonas macleodii suggests alternative lifestyles associated with different kinds of particulate organic matter."
Ivars-Martinez E., Martin-Cuadrado A.-B., D'Auria G., Mira A., Ferriera S., Johnson J., Friedman R., Rodriguez-Valera F.
ISME J. 2:1194-1212(2008) [PubMed: 18670397] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

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Cross-references

Sequence databases

CP001103 Genomic DNA. Translation: ACG64867.1.
RefSeqYP_002124861.1.

3D structure databases

ModBaseSearch...

Genome annotation databases

GeneID6777847.
GenomeReviewsGene locus MADE_00549 in contig CP001103_GR.
KEGGamc:MADE_00549.

Organism-specific databases

CMRSearch...

Phylogenomic databases

OMAYVPGRLF.

Family and domain databases

HAMAPMF_00662.
[Tree]
InterProIPR003817. PS_Dcarbxylase.
IPR005221. PS_decarb.
[Graphical view]
PANTHERPTHR10067. PS_decarb. 1 hit.
PfamPF02666. PS_Dcarbxylase. 1 hit.
[Graphical view]
TIGRFAMsTIGR00163. PS_decarb. 1 hit.
ProtoNetSearch...

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Entry information

Entry namePSD_ALTMD
AccessionPrimary (citable) accession number: B4S0J5
Entry history
Integrated into UniProtKB/Swiss-Prot: April 14, 2009
Last sequence update: September 23, 2008
Last modified: November 3, 2009
This is version 11 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation projectHAMAP (High-quality Automated and Manual Annotation of microbial Proteomes)

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Relevant documents

PATHWAY comments

Index of metabolic and biosynthesis pathways

SIMILARITY comments

Index of protein domains and families

Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents