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B4RZ25 (DCD_ALTMD) Reviewed, UniProtKB/Swiss-Prot

Last modified June 11, 2014. Version 43. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Deoxycytidine triphosphate deaminase

Short name=dCTP deaminase
EC=3.5.4.13
Gene names
Name:dcd
Ordered Locus Names:MADE_1010070
OrganismAlteromonas macleodii (strain DSM 17117 / Deep ecotype) [Complete proteome] [HAMAP]
Taxonomic identifier314275 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesAlteromonadaceaeAlteromonas

Protein attributes

Sequence length197 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Ontologies

Keywords
   Biological processNucleotide metabolism
   Molecular functionHydrolase
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processdUMP biosynthetic process

Inferred from electronic annotation. Source: UniProtKB-UniPathway

dUTP biosynthetic process

Inferred from electronic annotation. Source: InterPro

pyrimidine ribonucleotide biosynthetic process

Inferred from electronic annotation. Source: UniProtKB-HAMAP

   Molecular_functiondCTP deaminase activity

Inferred from electronic annotation. Source: UniProtKB-HAMAP

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 197197Deoxycytidine triphosphate deaminase HAMAP-Rule MF_00146
PRO_1000096405

Sequences

Sequence LengthMass (Da)Tools
B4RZ25 [UniParc].

Last modified September 23, 2008. Version 1.
Checksum: E3325AF924AD9795

FASTA19721,777
        10         20         30         40         50         60 
MRLCDRDIYQ HLQDGKIKID PTPDYDQISG VTVDIRLGNK FRVFEDHQAP FIDLSGPKAQ 

        70         80         90        100        110        120 
VQEALDHVMS DEIELEEGKA FFLHPGELAL AITHESVTLP DNIVGWLDGR SSLARLGLMV 

       130        140        150        160        170        180 
HVTAHRIDPG WSGNIVLEFY NSGKLPLALR PKMKIGALSF EVLSAPAEKP YNARVDAKYK 

       190 
GQAGAVASRI SSDDQSK 

« Hide

References

[1]"Comparative genomics of two ecotypes of the marine planktonic copiotroph Alteromonas macleodii suggests alternative lifestyles associated with different kinds of particulate organic matter."
Ivars-Martinez E., Martin-Cuadrado A.-B., D'Auria G., Mira A., Ferriera S., Johnson J., Friedman R., Rodriguez-Valera F.
ISME J. 2:1194-1212(2008) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: DSM 17117 / Deep ecotype.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP001103 Genomic DNA. Translation: AEA98152.1.
RefSeqYP_004427150.1. NC_011138.3.

3D structure databases

ProteinModelPortalB4RZ25.
SMRB4RZ25. Positions 1-193.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING314275.MADE_01987.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAEA98152; AEA98152; MADE_1010070.
GeneID10557355.
KEGGamc:MADE_1010070.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0717.
KOK01494.
OMARPGMMIG.

Enzyme and pathway databases

BioCycAMAC314275:GHA7-2034-MONOMER.
UniPathwayUPA00610; UER00665.

Family and domain databases

Gene3D2.70.40.10. 1 hit.
HAMAPMF_00146. dCTP_deaminase.
InterProIPR011962. dCTP_deam.
IPR010550. dCTP_deam_bac.
IPR029054. dUTPase-like.
[Graphical view]
PfamPF06559. DCD. 1 hit.
[Graphical view]
SUPFAMSSF51283. SSF51283. 1 hit.
TIGRFAMsTIGR02274. dCTP_deam. 1 hit.
ProtoNetSearch...

Entry information

Entry nameDCD_ALTMD
AccessionPrimary (citable) accession number: B4RZ25
Secondary accession number(s): F2GCU6
Entry history
Integrated into UniProtKB/Swiss-Prot: March 24, 2009
Last sequence update: September 23, 2008
Last modified: June 11, 2014
This is version 43 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

PATHWAY comments

Index of metabolic and biosynthesis pathways