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B4RZ25

- DCD_ALTMD

UniProt

B4RZ25 - DCD_ALTMD

Protein

Deoxycytidine triphosphate deaminase

Gene

dcd

Organism
Alteromonas macleodii (strain DSM 17117 / Deep ecotype)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 44 (01 Oct 2014)
      Sequence version 1 (23 Sep 2008)
      Previous versions | rss
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    Functioni

    Catalytic activityi

    dCTP + H2O = dUTP + NH3.UniRule annotation

    Pathwayi

    GO - Molecular functioni

    1. dCTP deaminase activity Source: UniProtKB-HAMAP

    GO - Biological processi

    1. dUMP biosynthetic process Source: UniProtKB-UniPathway
    2. dUTP biosynthetic process Source: InterPro
    3. pyrimidine ribonucleotide biosynthetic process Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    Hydrolase

    Keywords - Biological processi

    Nucleotide metabolism

    Enzyme and pathway databases

    BioCyciAMAC314275:GHA7-2034-MONOMER.
    UniPathwayiUPA00610; UER00665.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Deoxycytidine triphosphate deaminaseUniRule annotation (EC:3.5.4.13UniRule annotation)
    Short name:
    dCTP deaminaseUniRule annotation
    Gene namesi
    Name:dcdUniRule annotation
    Ordered Locus Names:MADE_1010070
    OrganismiAlteromonas macleodii (strain DSM 17117 / Deep ecotype)
    Taxonomic identifieri314275 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesAlteromonadaceaeAlteromonas
    ProteomesiUP000001870: Chromosome

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 197197Deoxycytidine triphosphate deaminasePRO_1000096405Add
    BLAST

    Interactioni

    Protein-protein interaction databases

    STRINGi314275.MADE_01987.

    Structurei

    3D structure databases

    ProteinModelPortaliB4RZ25.
    SMRiB4RZ25. Positions 1-193.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the dCTP deaminase family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG0717.
    KOiK01494.
    OMAiRPGMMIG.

    Family and domain databases

    Gene3Di2.70.40.10. 1 hit.
    HAMAPiMF_00146. dCTP_deaminase.
    InterProiIPR011962. dCTP_deam.
    IPR010550. dCTP_deam_bac.
    IPR029054. dUTPase-like.
    [Graphical view]
    PfamiPF06559. DCD. 1 hit.
    [Graphical view]
    SUPFAMiSSF51283. SSF51283. 1 hit.
    TIGRFAMsiTIGR02274. dCTP_deam. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    B4RZ25-1 [UniParc]FASTAAdd to Basket

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    MRLCDRDIYQ HLQDGKIKID PTPDYDQISG VTVDIRLGNK FRVFEDHQAP    50
    FIDLSGPKAQ VQEALDHVMS DEIELEEGKA FFLHPGELAL AITHESVTLP 100
    DNIVGWLDGR SSLARLGLMV HVTAHRIDPG WSGNIVLEFY NSGKLPLALR 150
    PKMKIGALSF EVLSAPAEKP YNARVDAKYK GQAGAVASRI SSDDQSK 197
    Length:197
    Mass (Da):21,777
    Last modified:September 23, 2008 - v1
    Checksum:iE3325AF924AD9795
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001103 Genomic DNA. Translation: AEA98152.1.
    RefSeqiYP_004427150.1. NC_011138.3.

    Genome annotation databases

    EnsemblBacteriaiAEA98152; AEA98152; MADE_1010070.
    GeneIDi10557355.
    KEGGiamc:MADE_1010070.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001103 Genomic DNA. Translation: AEA98152.1 .
    RefSeqi YP_004427150.1. NC_011138.3.

    3D structure databases

    ProteinModelPortali B4RZ25.
    SMRi B4RZ25. Positions 1-193.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 314275.MADE_01987.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AEA98152 ; AEA98152 ; MADE_1010070 .
    GeneIDi 10557355.
    KEGGi amc:MADE_1010070.

    Phylogenomic databases

    eggNOGi COG0717.
    KOi K01494.
    OMAi RPGMMIG.

    Enzyme and pathway databases

    UniPathwayi UPA00610 ; UER00665 .
    BioCyci AMAC314275:GHA7-2034-MONOMER.

    Family and domain databases

    Gene3Di 2.70.40.10. 1 hit.
    HAMAPi MF_00146. dCTP_deaminase.
    InterProi IPR011962. dCTP_deam.
    IPR010550. dCTP_deam_bac.
    IPR029054. dUTPase-like.
    [Graphical view ]
    Pfami PF06559. DCD. 1 hit.
    [Graphical view ]
    SUPFAMi SSF51283. SSF51283. 1 hit.
    TIGRFAMsi TIGR02274. dCTP_deam. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "Comparative genomics of two ecotypes of the marine planktonic copiotroph Alteromonas macleodii suggests alternative lifestyles associated with different kinds of particulate organic matter."
      Ivars-Martinez E., Martin-Cuadrado A.-B., D'Auria G., Mira A., Ferriera S., Johnson J., Friedman R., Rodriguez-Valera F.
      ISME J. 2:1194-1212(2008) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: DSM 17117 / Deep ecotype.

    Entry informationi

    Entry nameiDCD_ALTMD
    AccessioniPrimary (citable) accession number: B4RZ25
    Secondary accession number(s): F2GCU6
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: March 24, 2009
    Last sequence update: September 23, 2008
    Last modified: October 1, 2014
    This is version 44 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. PATHWAY comments
      Index of metabolic and biosynthesis pathways
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3