B4RY34 (RS21_ALTMD) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
30S ribosomal protein S21

Gene names

Name:	rpsU1
Ordered Locus Names:	MADE_1003780
AND
Name:	rpsU2
Ordered Locus Names:	MADE_1017965
AND
Name:	rpsU3
Ordered Locus Names:	MADE_1017970

Organism

Alteromonas macleodii (strain DSM 17117 / Deep ecotype) [Complete proteome] [HAMAP]

Taxonomic identifier

314275 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Gammaproteobacteria › Alteromonadales › Alteromonadaceae › Alteromonas

Protein attributes

Sequence length	71 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the ribosomal protein S21P family.

Ontologies

Keywords
Molecular function	Ribonucleoprotein Ribosomal protein
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	translation Inferred from electronic annotation. Source: InterPro
Cellular component	ribosome Inferred from electronic annotation. Source: UniProtKB-KW
Molecular function	structural constituent of ribosome Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 71	71	30S ribosomal protein S21 HAMAP MF_00358		PRO_1000120580

Sequences

	Sequence		Length	Mass (Da)
	B4RY34 [UniParc]. Last modified September 23, 2008. Version 1. Checksum: FAE5AD90CC91A961	FASTA	71	8,667
	10 20 30 40 50 60 MPIVKVRENE PFDVALRRFK RSCEKAGVLS EVRRREFFEK PTWERKRKKA AAKKRHLKKL 70 ARENARRVKL Y

References

[1]

"Comparative genomics of two ecotypes of the marine planktonic copiotroph Alteromonas macleodii suggests alternative lifestyles associated with different kinds of particulate organic matter." Ivars-Martinez E., Martin-Cuadrado A.-B., D'Auria G., Mira A., Ferriera S., Johnson J., Friedman R., Rodriguez-Valera F. ISME J. 2:1194-1212(2008) [PubMed: 18670397] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: DSM 17117 / Deep ecotype.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001103 Genomic DNA. Translation: AEA96904.1. CP001103 Genomic DNA. Translation: AEA99717.1. CP001103 Genomic DNA. Translation: AEA99718.1.
RefSeq	YP_004425902.1. NC_011138.2. YP_004428715.1. NC_011138.2. YP_004428716.1. NC_011138.2.
3D structure databases
ProteinModelPortal	B4RY34.
SMR	B4RY34. Positions 4-54.
ModBase	Search...
Protein-protein interaction databases
STRING	B4RY34.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	10556100. 10558939. 10558940.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HBG708268.
OMA	FFEKPTW.
ProtClustDB	PRK00270.
Family and domain databases
HAMAP	MF_00358. Ribosomal_S21. [Tree]
InterPro	IPR001911. Ribosomal_S21. IPR018278. Ribosomal_S21_CS. [Graphical view]
Pfam	PF01165. Ribosomal_S21. 1 hit. [Graphical view]
PRINTS	PR00976. RIBOSOMALS21.
ProDom	PD005521. Ribosomal_S21. 1 hit. [Graphical view] [Entries sharing at least one domain]
TIGRFAMs	TIGR00030. S21p. 1 hit.
PROSITE	PS01181. RIBOSOMAL_S21. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

RS21_ALTMD

Accession

Primary (citable) accession number: B4RY34
Secondary accession number(s): F2G767

Entry history

Integrated into UniProtKB/Swiss-Prot:	April 14, 2009
Last sequence update:	September 23, 2008
Last modified:	December 14, 2011
This is version 24 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Prokaryotic Protein Annotation Program