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Protein
Submitted name:

4-aminobutyrate aminotransferase

Gene

PHZ_c2000

Organism
Phenylobacterium zucineum (strain HLK1)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

AminotransferaseImported, Transferase

Keywords - Ligandi

Pyridoxal phosphateUniRule annotation

Enzyme and pathway databases

BioCyciPZUC450851:GHUG-2031-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
4-aminobutyrate aminotransferaseImported
Gene namesi
Ordered Locus Names:PHZ_c2000Imported
OrganismiPhenylobacterium zucineum (strain HLK1)Imported
Taxonomic identifieri450851 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaCaulobacteralesCaulobacteraceaePhenylobacterium
ProteomesiUP000001868 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi450851.PHZ_c2000.

Structurei

3D structure databases

ProteinModelPortaliB4RDM1.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0160.
HOGENOMiHOG000020206.
KOiK07250.
OMAiQVVRWLP.
OrthoDBiEOG6QVRHN.

Family and domain databases

Gene3Di3.40.640.10. 1 hit.
3.90.1150.10. 1 hit.
InterProiIPR004632. 4NH2But_aminotransferase_bac.
IPR005814. Aminotrans_3.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view]
PANTHERiPTHR11986. PTHR11986. 1 hit.
PfamiPF00202. Aminotran_3. 1 hit.
[Graphical view]
SUPFAMiSSF53383. SSF53383. 1 hit.
TIGRFAMsiTIGR00700. GABAtrnsam. 1 hit.
PROSITEiPS00600. AA_TRANSFER_CLASS_3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B4RDM1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSRNAELLSR RTAAVSRGVS TATPVFAARA ENAEIWDADG RRYVDFAGGI
60 70 80 90 100
AVLNVGHRHP KVIEAVRAQL DAYTHTAFQV MAYEPYIELA ERLNALAPFK
110 120 130 140 150
GPAKTLFFTT GAEAVENAVK IARVATGRTA VIAFTGAFHG RTMLTMGLTG
160 170 180 190 200
KVAPYKKNFG PSPAELYHLP FPGSRAGVSV DDTLRALDLL FAADVAPDRV
210 220 230 240 250
AAIIIEPVQG EGGFNPAPVE LMTALRRVCD EHGILLIADE VQTGFARTGK
260 270 280 290 300
MFGIEHYPVE PDLVPVAKSL AGGFPLSGVI GRADLMDVVD PGGLGGTYGG
310 320 330 340 350
SPVACAAALA VLDVIAEEGL LERAGAIGSA MRRRLSAIAA RNDVAPISEP
360 370 380 390 400
RGPGAMVAFD MLKSRGGDEP DGAAAKAVVS RALDAGLVLL SCGRYGETIR
410 420
LLVPLTVSDE VLAEGMDILE GALRDVAP
Length:428
Mass (Da):44,821
Last modified:September 23, 2008 - v1
Checksum:i57A1F3A132DEACCA
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000747 Genomic DNA. Translation: ACG78411.1.
RefSeqiWP_012522553.1. NC_011144.1.
YP_002130840.1. NC_011144.1.

Genome annotation databases

EnsemblBacteriaiACG78411; ACG78411; PHZ_c2000.
KEGGipzu:PHZ_c2000.
PATRICi22926996. VBIPheZuc44517_2566.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000747 Genomic DNA. Translation: ACG78411.1.
RefSeqiWP_012522553.1. NC_011144.1.
YP_002130840.1. NC_011144.1.

3D structure databases

ProteinModelPortaliB4RDM1.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi450851.PHZ_c2000.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACG78411; ACG78411; PHZ_c2000.
KEGGipzu:PHZ_c2000.
PATRICi22926996. VBIPheZuc44517_2566.

Phylogenomic databases

eggNOGiCOG0160.
HOGENOMiHOG000020206.
KOiK07250.
OMAiQVVRWLP.
OrthoDBiEOG6QVRHN.

Enzyme and pathway databases

BioCyciPZUC450851:GHUG-2031-MONOMER.

Family and domain databases

Gene3Di3.40.640.10. 1 hit.
3.90.1150.10. 1 hit.
InterProiIPR004632. 4NH2But_aminotransferase_bac.
IPR005814. Aminotrans_3.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view]
PANTHERiPTHR11986. PTHR11986. 1 hit.
PfamiPF00202. Aminotran_3. 1 hit.
[Graphical view]
SUPFAMiSSF53383. SSF53383. 1 hit.
TIGRFAMsiTIGR00700. GABAtrnsam. 1 hit.
PROSITEiPS00600. AA_TRANSFER_CLASS_3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Complete genome of Phenylobacterium zucineum - a novel facultative intracellular bacterium isolated from human erythroleukemia cell line K562."
    Luo Y., Xu X., Ding Z., Liu Z., Zhang B., Yan Z., Sun J., Hu S., Hu X.
    BMC Genomics 9:386-386(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: HLK1Imported.

Entry informationi

Entry nameiB4RDM1_PHEZH
AccessioniPrimary (citable) accession number: B4RDM1
Entry historyi
Integrated into UniProtKB/TrEMBL: September 23, 2008
Last sequence update: September 23, 2008
Last modified: May 27, 2015
This is version 41 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.