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B4RCK6 (B4RCK6_PHEZH) Unreviewed, UniProtKB/TrEMBL

Last modified January 25, 2012. Version 31. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Integration host factor subunit beta HAMAP MF_00381
Short name=IHF-beta HAMAP MF_00381
Gene names
Name:ihfB HAMAP MF_00381
Synonyms:himD HAMAP MF_00381
Ordered Locus Names:PHZ_c0191
OrganismPhenylobacterium zucineum (strain HLK1) [Complete proteome] [HAMAP]
Taxonomic identifier450851 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Alphaproteobacteria › Caulobacterales › Caulobacteraceae › Phenylobacterium

Protein attributes

Sequence length120 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control By similarity. HAMAP MF_00381 RuleBase RU003941 SAAS SAAS005685

Subunit structure

Heterodimer of an alpha and a beta chain By similarity. HAMAP MF_00381 RuleBase RU003941 SAAS SAAS005685

Sequence similarities

Belongs to the bacterial histone-like protein family. HAMAP MF_00381 RuleBase RU003939

Sequences

Sequence LengthMass (Da)Tools
B4RCK6 [UniParc].

Last modified September 23, 2008. Version 1.
Checksum: 1B64DD93878D923C

FASTA12013,590
        10         20         30         40         50         60 
MRKPFLRLER IGRVAHGRAG SRGLMIKSEL IAKLAEENPH LTQRDIERVV GVILERMIEA 

        70         80         90        100        110        120 
LEEGGRVELR GFGALSVRSR DARAGRNPRT GEPVDVRAKH VPFFKSGKEL RERLNAVDER

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References

[1]"Complete genome of Phenylobacterium zucineum - a novel facultative intracellular bacterium isolated from human erythroleukemia cell line K562."
Luo Y., Xu X., Ding Z., Liu Z., Zhang B., Yan Z., Sun J., Hu S., Hu X.
BMC Genomics 9:386-386(2008) [PubMed: 18700039] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000747 Genomic DNA. Translation: ACG76605.1.
RefSeqYP_002129034.1. NC_011144.1.

3D structure databases

ModBaseSearch...

Protein-protein interaction databases

STRINGB4RCK6.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID6789681.
GenomeReviewsGene locus PHZ_c0191 in contig CP000747_GR.
KEGGpzu:PHZ_c0191.
PATRIC22922914. VBIPheZuc44517_0552.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHBG705085.
OMAPEKYVPH.
ProtClustDBPRK00199.

Family and domain databases

HAMAPMF_00381. IHF_beta.
[Tree]
InterProIPR023630. DNA-bd_HU/IHF.
IPR000119. Hist_DNA-bd_bac.
IPR020816. Histone-like_DNA-bd_CS.
IPR010992. IHF-like_DNA-bd.
IPR005685. IHF_beta.
[Graphical view]
Gene3DG3DSA:4.10.520.10. Hist_DNA_bd_bac. 1 hit.
KOK05788.
PfamPF00216. Bac_DNA_binding. 1 hit.
[Graphical view]
PRINTSPR01727. DNABINDINGHU.
SMARTSM00411. BHL. 1 hit.
[Graphical view]
SUPFAMSSF47729. IHF_like_DNA_bnd. 1 hit.
TIGRFAMsTIGR00988. Hip. 1 hit.
PROSITEPS00045. HISTONE_LIKE. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameB4RCK6_PHEZH
AccessionPrimary (citable) accession number: B4RCK6
Entry history
Integrated into UniProtKB/TrEMBL: September 23, 2008
Last sequence update: September 23, 2008
Last modified: January 25, 2012
This is version 31 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry info