B4RBB1 (B4RBB1_PHEZH) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
DNA ligase, ATP-dependent EMBL ACG79756.1

Gene names

Ordered Locus Names:

PHZ_c3347 EMBL ACG79756.1

Organism

Phenylobacterium zucineum (strain HLK1) [Complete proteome] [HAMAP] EMBL ACG79756.1

Taxonomic identifier

450851 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Alphaproteobacteria › Caulobacterales › Caulobacteraceae › Phenylobacterium › Phenylobacterium zucineum

Protein attributes

Sequence length	540 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL ACG79756.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA ligation involved in DNA repair Inferred from electronic annotation. Source: InterPro DNA recombination Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	B4RBB1 [UniParc]. Last modified September 23, 2008. Version 1. Checksum: 81A82C386117DB45	FASTA	540	61,398
	10 20 30 40 50 60 MRAFAELLDR LSLTPSRNAK LTLVRDYLRE TPDPHRGWAL AALTGDLTFD AAKPTFIRKA 70 80 90 100 110 120 IEARMDPQLF WWSYDYVGDL AEAVSLCWPR RPGANREPDL AEVVEGLRDA SRAEVQGLIE 130 140 150 160 170 180 GWLDALPDPR ERWALLKLMT RELRVGLTAR LAKRAAAEMG GVDPAEIEEL WHALHPPYED 190 200 210 220 230 240 LFAWLEGRSE KPSSENPGRF RPVMLAQAID EAVDFARLDP ADYAAEWKWD GIRVQAVHEG 250 260 270 280 290 300 GVRRLYTRTG DDISRTFPDI LGALEREGVL DGELLVVRDG RVASFADLQQ RLNRKAVDAK 310 320 330 340 350 360 LLAAYPAGIR AYDLLQEGEE DLRPLPFAER RQRLEAFVAR EASPRIDLSP MQPFDTWADL 370 380 390 400 410 420 TQLRASPPAG DAQIAEGVML KRWDSIYEAG RPKGPWFKWK RDPFLVDAVL MYAQRGHGKR 430 440 450 460 470 480 SSFYSDYTFG VWCDDPLGKR VLTPVGKAYF GFTDEELKQI DKFVRDHTVE RFGPVRAVRA 490 500 510 520 530 540 EPHAGLVFEV AFEGLQRSSR HKSGVAMRFP RISRIRWDKP PGEADELATL ERLLERMEAR

References

[1]

"Complete genome of Phenylobacterium zucineum--a novel facultative intracellular bacterium isolated from human erythroleukemia cell line K562." Luo Y., Xu X., Ding Z., Liu Z., Zhang B., Yan Z., Sun J., Hu S., Hu X. BMC Genomics 9:386-386(2008) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: HLK1 EMBL ACG79756.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000747 Genomic DNA. Translation: ACG79756.1.
RefSeq	YP_002132185.1. NC_011144.1.
3D structure databases
ProteinModelPortal	B4RBB1.
ModBase	Search...
Protein-protein interaction databases
STRING	450851.PHZ_c3347.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ACG79756; ACG79756; PHZ_c3347.
GeneID	6789298.
KEGG	pzu:PHZ_c3347.
PATRIC	22930060. VBIPheZuc44517_4086.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG1793.
HOGENOM	HOG000036007.
KO	K01971.
OMA	AYDLLEW.
ProtClustDB	PRK09247.
Enzyme and pathway databases
BioCyc	PZUC450851:GHUG-3390-MONOMER.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR026333. ATP_dep_DNA_lig_pp_1105_fam. IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR016059. DNA_ligase_ATP-dep_CS. IPR012308. DNA_ligase_ATP-dep_N. IPR012340. NA-bd_OB-fold. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. PF04675. DNA_ligase_A_N. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMs	TIGR04120. DNA_lig_bact. 1 hit.
PROSITE	PS00697. DNA_LIGASE_A1. 1 hit. PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

B4RBB1_PHEZH

Accession

Primary (citable) accession number: B4RBB1

Entry history

Integrated into UniProtKB/TrEMBL:	September 23, 2008
Last sequence update:	September 23, 2008
Last modified:	May 1, 2013
This is version 33 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)