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B4RBB1

- B4RBB1_PHEZH

UniProt

B4RBB1 - B4RBB1_PHEZH

Protein
Submitted name:

DNA ligase, ATP-dependent

Gene

PHZ_c3347

Organism
Phenylobacterium zucineum (strain HLK1)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 38 (01 Oct 2014)
      Sequence version 1 (23 Sep 2008)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA binding Source: InterPro
    3. DNA ligase (ATP) activity Source: InterPro

    GO - Biological processi

    1. DNA ligation involved in DNA repair Source: InterPro
    2. DNA recombination Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciPZUC450851:GHUG-3390-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    DNA ligase, ATP-dependentImported
    Gene namesi
    Ordered Locus Names:PHZ_c3347Imported
    OrganismiPhenylobacterium zucineum (strain HLK1)Imported
    Taxonomic identifieri450851 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaCaulobacteralesCaulobacteraceaePhenylobacterium
    ProteomesiUP000001868: Chromosome

    Interactioni

    Protein-protein interaction databases

    STRINGi450851.PHZ_c3347.

    Structurei

    3D structure databases

    ProteinModelPortaliB4RBB1.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    eggNOGiCOG1793.
    HOGENOMiHOG000036007.
    KOiK01971.
    OMAiRVWLWSR.
    OrthoDBiEOG6Q8HXT.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
    PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    B4RBB1-1 [UniParc]FASTAAdd to Basket

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    MRAFAELLDR LSLTPSRNAK LTLVRDYLRE TPDPHRGWAL AALTGDLTFD    50
    AAKPTFIRKA IEARMDPQLF WWSYDYVGDL AEAVSLCWPR RPGANREPDL 100
    AEVVEGLRDA SRAEVQGLIE GWLDALPDPR ERWALLKLMT RELRVGLTAR 150
    LAKRAAAEMG GVDPAEIEEL WHALHPPYED LFAWLEGRSE KPSSENPGRF 200
    RPVMLAQAID EAVDFARLDP ADYAAEWKWD GIRVQAVHEG GVRRLYTRTG 250
    DDISRTFPDI LGALEREGVL DGELLVVRDG RVASFADLQQ RLNRKAVDAK 300
    LLAAYPAGIR AYDLLQEGEE DLRPLPFAER RQRLEAFVAR EASPRIDLSP 350
    MQPFDTWADL TQLRASPPAG DAQIAEGVML KRWDSIYEAG RPKGPWFKWK 400
    RDPFLVDAVL MYAQRGHGKR SSFYSDYTFG VWCDDPLGKR VLTPVGKAYF 450
    GFTDEELKQI DKFVRDHTVE RFGPVRAVRA EPHAGLVFEV AFEGLQRSSR 500
    HKSGVAMRFP RISRIRWDKP PGEADELATL ERLLERMEAR 540
    Length:540
    Mass (Da):61,398
    Last modified:September 23, 2008 - v1
    Checksum:i81A82C386117DB45
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000747 Genomic DNA. Translation: ACG79756.1.
    RefSeqiYP_002132185.1. NC_011144.1.

    Genome annotation databases

    EnsemblBacteriaiACG79756; ACG79756; PHZ_c3347.
    GeneIDi6789298.
    KEGGipzu:PHZ_c3347.
    PATRICi22930060. VBIPheZuc44517_4086.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000747 Genomic DNA. Translation: ACG79756.1 .
    RefSeqi YP_002132185.1. NC_011144.1.

    3D structure databases

    ProteinModelPortali B4RBB1.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 450851.PHZ_c3347.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ACG79756 ; ACG79756 ; PHZ_c3347 .
    GeneIDi 6789298.
    KEGGi pzu:PHZ_c3347.
    PATRICi 22930060. VBIPheZuc44517_4086.

    Phylogenomic databases

    eggNOGi COG1793.
    HOGENOMi HOG000036007.
    KOi K01971.
    OMAi RVWLWSR.
    OrthoDBi EOG6Q8HXT.

    Enzyme and pathway databases

    BioCyci PZUC450851:GHUG-3390-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR026333. ATP_dep_DNA_lig_pp_1105_fam.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR04120. DNA_lig_bact. 1 hit.
    PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Complete genome of Phenylobacterium zucineum - a novel facultative intracellular bacterium isolated from human erythroleukemia cell line K562."
      Luo Y., Xu X., Ding Z., Liu Z., Zhang B., Yan Z., Sun J., Hu S., Hu X.
      BMC Genomics 9:386-386(2008) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: HLK1Imported.

    Entry informationi

    Entry nameiB4RBB1_PHEZH
    AccessioniPrimary (citable) accession number: B4RBB1
    Entry historyi
    Integrated into UniProtKB/TrEMBL: September 23, 2008
    Last sequence update: September 23, 2008
    Last modified: October 1, 2014
    This is version 38 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3