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Protein
Submitted name:

DNA ligase, ATP-dependent

Gene

PHZ_c3347

Organism
Phenylobacterium zucineum (strain HLK1)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA binding Source: InterPro
  3. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciPZUC450851:GHUG-3390-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligase, ATP-dependentImported
Gene namesi
Ordered Locus Names:PHZ_c3347Imported
OrganismiPhenylobacterium zucineum (strain HLK1)Imported
Taxonomic identifieri450851 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaCaulobacteralesCaulobacteraceaePhenylobacterium
ProteomesiUP000001868: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi450851.PHZ_c3347.

Structurei

3D structure databases

ProteinModelPortaliB4RBB1.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000036007.
KOiK01971.
OMAiGQPYPFF.
OrthoDBiEOG6Q8HXT.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B4RBB1-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MRAFAELLDR LSLTPSRNAK LTLVRDYLRE TPDPHRGWAL AALTGDLTFD
60 70 80 90 100
AAKPTFIRKA IEARMDPQLF WWSYDYVGDL AEAVSLCWPR RPGANREPDL
110 120 130 140 150
AEVVEGLRDA SRAEVQGLIE GWLDALPDPR ERWALLKLMT RELRVGLTAR
160 170 180 190 200
LAKRAAAEMG GVDPAEIEEL WHALHPPYED LFAWLEGRSE KPSSENPGRF
210 220 230 240 250
RPVMLAQAID EAVDFARLDP ADYAAEWKWD GIRVQAVHEG GVRRLYTRTG
260 270 280 290 300
DDISRTFPDI LGALEREGVL DGELLVVRDG RVASFADLQQ RLNRKAVDAK
310 320 330 340 350
LLAAYPAGIR AYDLLQEGEE DLRPLPFAER RQRLEAFVAR EASPRIDLSP
360 370 380 390 400
MQPFDTWADL TQLRASPPAG DAQIAEGVML KRWDSIYEAG RPKGPWFKWK
410 420 430 440 450
RDPFLVDAVL MYAQRGHGKR SSFYSDYTFG VWCDDPLGKR VLTPVGKAYF
460 470 480 490 500
GFTDEELKQI DKFVRDHTVE RFGPVRAVRA EPHAGLVFEV AFEGLQRSSR
510 520 530 540
HKSGVAMRFP RISRIRWDKP PGEADELATL ERLLERMEAR
Length:540
Mass (Da):61,398
Last modified:September 23, 2008 - v1
Checksum:i81A82C386117DB45
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000747 Genomic DNA. Translation: ACG79756.1.
RefSeqiYP_002132185.1. NC_011144.1.

Genome annotation databases

EnsemblBacteriaiACG79756; ACG79756; PHZ_c3347.
GeneIDi6789298.
KEGGipzu:PHZ_c3347.
PATRICi22930060. VBIPheZuc44517_4086.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000747 Genomic DNA. Translation: ACG79756.1.
RefSeqiYP_002132185.1. NC_011144.1.

3D structure databases

ProteinModelPortaliB4RBB1.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi450851.PHZ_c3347.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACG79756; ACG79756; PHZ_c3347.
GeneIDi6789298.
KEGGipzu:PHZ_c3347.
PATRICi22930060. VBIPheZuc44517_4086.

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000036007.
KOiK01971.
OMAiGQPYPFF.
OrthoDBiEOG6Q8HXT.

Enzyme and pathway databases

BioCyciPZUC450851:GHUG-3390-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Complete genome of Phenylobacterium zucineum - a novel facultative intracellular bacterium isolated from human erythroleukemia cell line K562."
    Luo Y., Xu X., Ding Z., Liu Z., Zhang B., Yan Z., Sun J., Hu S., Hu X.
    BMC Genomics 9:386-386(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: HLK1Imported.

Entry informationi

Entry nameiB4RBB1_PHEZH
AccessioniPrimary (citable) accession number: B4RBB1
Entry historyi
Integrated into UniProtKB/TrEMBL: September 23, 2008
Last sequence update: September 23, 2008
Last modified: February 4, 2015
This is version 41 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.