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B4RBB1

- B4RBB1_PHEZH

UniProt

B4RBB1 - B4RBB1_PHEZH

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Protein
Submitted name: DNA ligase, ATP-dependent
Gene
PHZ_c3347
Organism
Phenylobacterium zucineum (strain HLK1)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA binding Source: InterPro
  3. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciPZUC450851:GHUG-3390-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligase, ATP-dependentImported
Gene namesi
Ordered Locus Names:PHZ_c3347Imported
OrganismiPhenylobacterium zucineum (strain HLK1)Imported
Taxonomic identifieri450851 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaCaulobacteralesCaulobacteraceaePhenylobacterium
ProteomesiUP000001868: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi450851.PHZ_c3347.

Structurei

3D structure databases

ProteinModelPortaliB4RBB1.

Family & Domainsi

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000036007.
KOiK01971.
OMAiRVWLWSR.
OrthoDBiEOG6Q8HXT.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B4RBB1-1 [UniParc]FASTAAdd to Basket

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MRAFAELLDR LSLTPSRNAK LTLVRDYLRE TPDPHRGWAL AALTGDLTFD    50
AAKPTFIRKA IEARMDPQLF WWSYDYVGDL AEAVSLCWPR RPGANREPDL 100
AEVVEGLRDA SRAEVQGLIE GWLDALPDPR ERWALLKLMT RELRVGLTAR 150
LAKRAAAEMG GVDPAEIEEL WHALHPPYED LFAWLEGRSE KPSSENPGRF 200
RPVMLAQAID EAVDFARLDP ADYAAEWKWD GIRVQAVHEG GVRRLYTRTG 250
DDISRTFPDI LGALEREGVL DGELLVVRDG RVASFADLQQ RLNRKAVDAK 300
LLAAYPAGIR AYDLLQEGEE DLRPLPFAER RQRLEAFVAR EASPRIDLSP 350
MQPFDTWADL TQLRASPPAG DAQIAEGVML KRWDSIYEAG RPKGPWFKWK 400
RDPFLVDAVL MYAQRGHGKR SSFYSDYTFG VWCDDPLGKR VLTPVGKAYF 450
GFTDEELKQI DKFVRDHTVE RFGPVRAVRA EPHAGLVFEV AFEGLQRSSR 500
HKSGVAMRFP RISRIRWDKP PGEADELATL ERLLERMEAR 540
Length:540
Mass (Da):61,398
Last modified:September 23, 2008 - v1
Checksum:i81A82C386117DB45
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000747 Genomic DNA. Translation: ACG79756.1.
RefSeqiYP_002132185.1. NC_011144.1.

Genome annotation databases

EnsemblBacteriaiACG79756; ACG79756; PHZ_c3347.
GeneIDi6789298.
KEGGipzu:PHZ_c3347.
PATRICi22930060. VBIPheZuc44517_4086.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000747 Genomic DNA. Translation: ACG79756.1 .
RefSeqi YP_002132185.1. NC_011144.1.

3D structure databases

ProteinModelPortali B4RBB1.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 450851.PHZ_c3347.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ACG79756 ; ACG79756 ; PHZ_c3347 .
GeneIDi 6789298.
KEGGi pzu:PHZ_c3347.
PATRICi 22930060. VBIPheZuc44517_4086.

Phylogenomic databases

eggNOGi COG1793.
HOGENOMi HOG000036007.
KOi K01971.
OMAi RVWLWSR.
OrthoDBi EOG6Q8HXT.

Enzyme and pathway databases

BioCyci PZUC450851:GHUG-3390-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR04120. DNA_lig_bact. 1 hit.
PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Complete genome of Phenylobacterium zucineum - a novel facultative intracellular bacterium isolated from human erythroleukemia cell line K562."
    Luo Y., Xu X., Ding Z., Liu Z., Zhang B., Yan Z., Sun J., Hu S., Hu X.
    BMC Genomics 9:386-386(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: HLK1Imported.

Entry informationi

Entry nameiB4RBB1_PHEZH
AccessioniPrimary (citable) accession number: B4RBB1
Entry historyi
Integrated into UniProtKB/TrEMBL: September 23, 2008
Last sequence update: September 23, 2008
Last modified: May 14, 2014
This is version 37 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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