SubmitCancel

Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.

B4RAS0

- B4RAS0_PHEZH

UniProt

B4RAS0 - B4RAS0_PHEZH

(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

Protein
Submitted name:

ATP-dependent DNA ligase

Gene
PHZ_c3259
Organism
Phenylobacterium zucineum (strain HLK1)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciPZUC450851:GHUG-3302-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:PHZ_c3259Imported
OrganismiPhenylobacterium zucineum (strain HLK1)Imported
Taxonomic identifieri450851 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaCaulobacteralesCaulobacteraceaePhenylobacterium
ProteomesiUP000001868: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi450851.PHZ_c3259.

Family & Domainsi

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiRTETWAK.
OrthoDBiEOG661H49.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B4RAS0-1 [UniParc]FASTAAdd to Basket

« Hide

MADKLARYRA MRDFSKTAEP AGAEKTKASR RLRFVIQKHA ATRLHYDFRL    50
ELDGVFLSWA VTKGPSLNPA DRRLAVQTED HPLDYGDFEG TIPKGQYGGG 100
TVMLWDRGYW EPEGDARAML KKGDLKFTLD GERLKGSWVL VRMKRREREK 150
RDNWLLIKHH DGWSVEDHGE FLVEGETSSV ASGRAMDEIE AGKGKGPTKF 200
MTGKGRASGK DVWQSNRADP KAPPPAAEKA APAPKLKAAA LPGFVAPQLA 250
KSVDRPPQGA GWGHEIKFDG YRLQLRVENG KATLKTRAGL DWTAKFKEIA 300
ADAKPLPDGL YDGEACALDH NGSPDFPALQ AALSEDRTAD LVFFVFDALF 350
LDGEDLRALP LTERKSRLEA AVAAAGKRLE RRIRYVAHFE TAGDAVLKSA 400
CRMSLEGIVS KRLDAPYRSG RSDTWQKSKC RAGHEVVIGG WTGERGQLRS 450
LLVGVNRDGK LVYVGRVGTG FGRETVGRVL PRLEKVASDK SPFTGPNAPR 500
KSGDINWARP ELVAEIEFAG FTGDGNVRQA SFKGLREDKP AAEVEAETPA 550
KTQLAEPAPA GKAKAGPRTA PAKPATKPRA KPRAKPRAGD NVVMGVVLSN 600
PDKALWPDDG KGGVVTKLDL ARYLETVGPW MMEHIKGRPC SIIRMPDGIE 650
GQQRFFQRHA GKGSSALISE VQVFGDHKPY IQIDRIEALA ALAQIGAVEY 700
HPWNCQPGQP EVPGRLVFDL DPDEAIPFQR VIDAAWEVKE RLESLGLAAF 750
CKTTGGKGLH VVTPLKAGKG EMDWPTAKAF ARDVCLAIAA DAPDRYVVNM 800
AKAKRKGRIF LDYLRNDRMS TAVAPLSPRG RPLAPVSFPL TWDQVKTGLE 850
PKRWTIRTAP ALLKKTKAWA DYCDAERPLK DAIRKLK 887
Length:887
Mass (Da):97,425
Last modified:September 23, 2008 - v1
Checksum:i134DDB14B92DA028
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000747 Genomic DNA. Translation: ACG79668.1.
RefSeqiYP_002132097.1. NC_011144.1.

Genome annotation databases

EnsemblBacteriaiACG79668; ACG79668; PHZ_c3259.
GeneIDi6789210.
KEGGipzu:PHZ_c3259.
PATRICi22929874. VBIPheZuc44517_3993.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000747 Genomic DNA. Translation: ACG79668.1 .
RefSeqi YP_002132097.1. NC_011144.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 450851.PHZ_c3259.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ACG79668 ; ACG79668 ; PHZ_c3259 .
GeneIDi 6789210.
KEGGi pzu:PHZ_c3259.
PATRICi 22929874. VBIPheZuc44517_3993.

Phylogenomic databases

eggNOGi COG3285.
HOGENOMi HOG000222509.
KOi K01971.
OMAi RTETWAK.
OrthoDBi EOG661H49.

Enzyme and pathway databases

BioCyci PZUC450851:GHUG-3302-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Complete genome of Phenylobacterium zucineum - a novel facultative intracellular bacterium isolated from human erythroleukemia cell line K562."
    Luo Y., Xu X., Ding Z., Liu Z., Zhang B., Yan Z., Sun J., Hu S., Hu X.
    BMC Genomics 9:386-386(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: HLK1Imported.

Entry informationi

Entry nameiB4RAS0_PHEZH
AccessioniPrimary (citable) accession number: B4RAS0
Entry historyi
Integrated into UniProtKB/TrEMBL: September 23, 2008
Last sequence update: September 23, 2008
Last modified: May 14, 2014
This is version 38 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

Similar proteinsi