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B4RAS0 (B4RAS0_PHEZH) Unreviewed, UniProtKB/TrEMBL

Last modified May 14, 2014. Version 38. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Ordered Locus Names:PHZ_c3259 EMBL ACG79668.1
OrganismPhenylobacterium zucineum (strain HLK1) [Complete proteome] [HAMAP] EMBL ACG79668.1
Taxonomic identifier450851 [NCBI]
Taxonomic lineageBacteriaProteobacteriaAlphaproteobacteriaCaulobacteralesCaulobacteraceaePhenylobacterium

Protein attributes

Sequence length887 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLigase EMBL ACG79668.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA recombination

Inferred from electronic annotation. Source: InterPro

DNA repair

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
B4RAS0 [UniParc].

Last modified September 23, 2008. Version 1.
Checksum: 134DDB14B92DA028

FASTA88797,425
        10         20         30         40         50         60 
MADKLARYRA MRDFSKTAEP AGAEKTKASR RLRFVIQKHA ATRLHYDFRL ELDGVFLSWA 

        70         80         90        100        110        120 
VTKGPSLNPA DRRLAVQTED HPLDYGDFEG TIPKGQYGGG TVMLWDRGYW EPEGDARAML 

       130        140        150        160        170        180 
KKGDLKFTLD GERLKGSWVL VRMKRREREK RDNWLLIKHH DGWSVEDHGE FLVEGETSSV 

       190        200        210        220        230        240 
ASGRAMDEIE AGKGKGPTKF MTGKGRASGK DVWQSNRADP KAPPPAAEKA APAPKLKAAA 

       250        260        270        280        290        300 
LPGFVAPQLA KSVDRPPQGA GWGHEIKFDG YRLQLRVENG KATLKTRAGL DWTAKFKEIA 

       310        320        330        340        350        360 
ADAKPLPDGL YDGEACALDH NGSPDFPALQ AALSEDRTAD LVFFVFDALF LDGEDLRALP 

       370        380        390        400        410        420 
LTERKSRLEA AVAAAGKRLE RRIRYVAHFE TAGDAVLKSA CRMSLEGIVS KRLDAPYRSG 

       430        440        450        460        470        480 
RSDTWQKSKC RAGHEVVIGG WTGERGQLRS LLVGVNRDGK LVYVGRVGTG FGRETVGRVL 

       490        500        510        520        530        540 
PRLEKVASDK SPFTGPNAPR KSGDINWARP ELVAEIEFAG FTGDGNVRQA SFKGLREDKP 

       550        560        570        580        590        600 
AAEVEAETPA KTQLAEPAPA GKAKAGPRTA PAKPATKPRA KPRAKPRAGD NVVMGVVLSN 

       610        620        630        640        650        660 
PDKALWPDDG KGGVVTKLDL ARYLETVGPW MMEHIKGRPC SIIRMPDGIE GQQRFFQRHA 

       670        680        690        700        710        720 
GKGSSALISE VQVFGDHKPY IQIDRIEALA ALAQIGAVEY HPWNCQPGQP EVPGRLVFDL 

       730        740        750        760        770        780 
DPDEAIPFQR VIDAAWEVKE RLESLGLAAF CKTTGGKGLH VVTPLKAGKG EMDWPTAKAF 

       790        800        810        820        830        840 
ARDVCLAIAA DAPDRYVVNM AKAKRKGRIF LDYLRNDRMS TAVAPLSPRG RPLAPVSFPL 

       850        860        870        880 
TWDQVKTGLE PKRWTIRTAP ALLKKTKAWA DYCDAERPLK DAIRKLK 

« Hide

References

[1]"Complete genome of Phenylobacterium zucineum - a novel facultative intracellular bacterium isolated from human erythroleukemia cell line K562."
Luo Y., Xu X., Ding Z., Liu Z., Zhang B., Yan Z., Sun J., Hu S., Hu X.
BMC Genomics 9:386-386(2008) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: HLK1 EMBL ACG79668.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000747 Genomic DNA. Translation: ACG79668.1.
RefSeqYP_002132097.1. NC_011144.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING450851.PHZ_c3259.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACG79668; ACG79668; PHZ_c3259.
GeneID6789210.
KEGGpzu:PHZ_c3259.
PATRIC22929874. VBIPheZuc44517_3993.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG3285.
HOGENOMHOG000222509.
KOK01971.
OMARTETWAK.
OrthoDBEOG661H49.

Enzyme and pathway databases

BioCycPZUC450851:GHUG-3302-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameB4RAS0_PHEZH
AccessionPrimary (citable) accession number: B4RAS0
Entry history
Integrated into UniProtKB/TrEMBL: September 23, 2008
Last sequence update: September 23, 2008
Last modified: May 14, 2014
This is version 38 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)