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B4RAS0

- B4RAS0_PHEZH

UniProt

B4RAS0 - B4RAS0_PHEZH

Protein
Submitted name:

ATP-dependent DNA ligase

Gene

PHZ_c3259

Organism
Phenylobacterium zucineum (strain HLK1)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 39 (01 Oct 2014)
      Sequence version 1 (23 Sep 2008)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciPZUC450851:GHUG-3302-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    ATP-dependent DNA ligaseImported
    Gene namesi
    Ordered Locus Names:PHZ_c3259Imported
    OrganismiPhenylobacterium zucineum (strain HLK1)Imported
    Taxonomic identifieri450851 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaCaulobacteralesCaulobacteraceaePhenylobacterium
    ProteomesiUP000001868: Chromosome

    Interactioni

    Protein-protein interaction databases

    STRINGi450851.PHZ_c3259.

    Family & Domainsi

    Phylogenomic databases

    eggNOGiCOG3285.
    HOGENOMiHOG000222509.
    KOiK01971.
    OMAiRTETWAK.
    OrthoDBiEOG661H49.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    B4RAS0-1 [UniParc]FASTAAdd to Basket

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    MADKLARYRA MRDFSKTAEP AGAEKTKASR RLRFVIQKHA ATRLHYDFRL    50
    ELDGVFLSWA VTKGPSLNPA DRRLAVQTED HPLDYGDFEG TIPKGQYGGG 100
    TVMLWDRGYW EPEGDARAML KKGDLKFTLD GERLKGSWVL VRMKRREREK 150
    RDNWLLIKHH DGWSVEDHGE FLVEGETSSV ASGRAMDEIE AGKGKGPTKF 200
    MTGKGRASGK DVWQSNRADP KAPPPAAEKA APAPKLKAAA LPGFVAPQLA 250
    KSVDRPPQGA GWGHEIKFDG YRLQLRVENG KATLKTRAGL DWTAKFKEIA 300
    ADAKPLPDGL YDGEACALDH NGSPDFPALQ AALSEDRTAD LVFFVFDALF 350
    LDGEDLRALP LTERKSRLEA AVAAAGKRLE RRIRYVAHFE TAGDAVLKSA 400
    CRMSLEGIVS KRLDAPYRSG RSDTWQKSKC RAGHEVVIGG WTGERGQLRS 450
    LLVGVNRDGK LVYVGRVGTG FGRETVGRVL PRLEKVASDK SPFTGPNAPR 500
    KSGDINWARP ELVAEIEFAG FTGDGNVRQA SFKGLREDKP AAEVEAETPA 550
    KTQLAEPAPA GKAKAGPRTA PAKPATKPRA KPRAKPRAGD NVVMGVVLSN 600
    PDKALWPDDG KGGVVTKLDL ARYLETVGPW MMEHIKGRPC SIIRMPDGIE 650
    GQQRFFQRHA GKGSSALISE VQVFGDHKPY IQIDRIEALA ALAQIGAVEY 700
    HPWNCQPGQP EVPGRLVFDL DPDEAIPFQR VIDAAWEVKE RLESLGLAAF 750
    CKTTGGKGLH VVTPLKAGKG EMDWPTAKAF ARDVCLAIAA DAPDRYVVNM 800
    AKAKRKGRIF LDYLRNDRMS TAVAPLSPRG RPLAPVSFPL TWDQVKTGLE 850
    PKRWTIRTAP ALLKKTKAWA DYCDAERPLK DAIRKLK 887
    Length:887
    Mass (Da):97,425
    Last modified:September 23, 2008 - v1
    Checksum:i134DDB14B92DA028
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000747 Genomic DNA. Translation: ACG79668.1.
    RefSeqiYP_002132097.1. NC_011144.1.

    Genome annotation databases

    EnsemblBacteriaiACG79668; ACG79668; PHZ_c3259.
    GeneIDi6789210.
    KEGGipzu:PHZ_c3259.
    PATRICi22929874. VBIPheZuc44517_3993.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000747 Genomic DNA. Translation: ACG79668.1 .
    RefSeqi YP_002132097.1. NC_011144.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 450851.PHZ_c3259.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ACG79668 ; ACG79668 ; PHZ_c3259 .
    GeneIDi 6789210.
    KEGGi pzu:PHZ_c3259.
    PATRICi 22929874. VBIPheZuc44517_3993.

    Phylogenomic databases

    eggNOGi COG3285.
    HOGENOMi HOG000222509.
    KOi K01971.
    OMAi RTETWAK.
    OrthoDBi EOG661H49.

    Enzyme and pathway databases

    BioCyci PZUC450851:GHUG-3302-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Complete genome of Phenylobacterium zucineum - a novel facultative intracellular bacterium isolated from human erythroleukemia cell line K562."
      Luo Y., Xu X., Ding Z., Liu Z., Zhang B., Yan Z., Sun J., Hu S., Hu X.
      BMC Genomics 9:386-386(2008) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: HLK1Imported.

    Entry informationi

    Entry nameiB4RAS0_PHEZH
    AccessioniPrimary (citable) accession number: B4RAS0
    Entry historyi
    Integrated into UniProtKB/TrEMBL: September 23, 2008
    Last sequence update: September 23, 2008
    Last modified: October 1, 2014
    This is version 39 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3