B4RAS0 (B4RAS0_PHEZH) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
ATP-dependent DNA ligase EMBL ACG79668.1

Gene names

Ordered Locus Names:

PHZ_c3259 EMBL ACG79668.1

Organism

Phenylobacterium zucineum (strain HLK1) [Complete proteome] [HAMAP] EMBL ACG79668.1

Taxonomic identifier

450851 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Alphaproteobacteria › Caulobacterales › Caulobacteraceae › Phenylobacterium › Phenylobacterium zucineum

Protein attributes

Sequence length	887 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL ACG79668.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA recombination Inferred from electronic annotation. Source: InterPro DNA repair Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	B4RAS0 [UniParc]. Last modified September 23, 2008. Version 1. Checksum: 134DDB14B92DA028	FASTA	887	97,425
	10 20 30 40 50 60 MADKLARYRA MRDFSKTAEP AGAEKTKASR RLRFVIQKHA ATRLHYDFRL ELDGVFLSWA 70 80 90 100 110 120 VTKGPSLNPA DRRLAVQTED HPLDYGDFEG TIPKGQYGGG TVMLWDRGYW EPEGDARAML 130 140 150 160 170 180 KKGDLKFTLD GERLKGSWVL VRMKRREREK RDNWLLIKHH DGWSVEDHGE FLVEGETSSV 190 200 210 220 230 240 ASGRAMDEIE AGKGKGPTKF MTGKGRASGK DVWQSNRADP KAPPPAAEKA APAPKLKAAA 250 260 270 280 290 300 LPGFVAPQLA KSVDRPPQGA GWGHEIKFDG YRLQLRVENG KATLKTRAGL DWTAKFKEIA 310 320 330 340 350 360 ADAKPLPDGL YDGEACALDH NGSPDFPALQ AALSEDRTAD LVFFVFDALF LDGEDLRALP 370 380 390 400 410 420 LTERKSRLEA AVAAAGKRLE RRIRYVAHFE TAGDAVLKSA CRMSLEGIVS KRLDAPYRSG 430 440 450 460 470 480 RSDTWQKSKC RAGHEVVIGG WTGERGQLRS LLVGVNRDGK LVYVGRVGTG FGRETVGRVL 490 500 510 520 530 540 PRLEKVASDK SPFTGPNAPR KSGDINWARP ELVAEIEFAG FTGDGNVRQA SFKGLREDKP 550 560 570 580 590 600 AAEVEAETPA KTQLAEPAPA GKAKAGPRTA PAKPATKPRA KPRAKPRAGD NVVMGVVLSN 610 620 630 640 650 660 PDKALWPDDG KGGVVTKLDL ARYLETVGPW MMEHIKGRPC SIIRMPDGIE GQQRFFQRHA 670 680 690 700 710 720 GKGSSALISE VQVFGDHKPY IQIDRIEALA ALAQIGAVEY HPWNCQPGQP EVPGRLVFDL 730 740 750 760 770 780 DPDEAIPFQR VIDAAWEVKE RLESLGLAAF CKTTGGKGLH VVTPLKAGKG EMDWPTAKAF 790 800 810 820 830 840 ARDVCLAIAA DAPDRYVVNM AKAKRKGRIF LDYLRNDRMS TAVAPLSPRG RPLAPVSFPL 850 860 870 880 TWDQVKTGLE PKRWTIRTAP ALLKKTKAWA DYCDAERPLK DAIRKLK

References

[1]

"Complete genome of Phenylobacterium zucineum--a novel facultative intracellular bacterium isolated from human erythroleukemia cell line K562." Luo Y., Xu X., Ding Z., Liu Z., Zhang B., Yan Z., Sun J., Hu S., Hu X. BMC Genomics 9:386-386(2008) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: HLK1 EMBL ACG79668.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000747 Genomic DNA. Translation: ACG79668.1.
RefSeq	YP_002132097.1. NC_011144.1.
3D structure databases
ModBase	Search...
Protein-protein interaction databases
STRING	450851.PHZ_c3259.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ACG79668; ACG79668; PHZ_c3259.
GeneID	6789210.
KEGG	pzu:PHZ_c3259.
PATRIC	22929874. VBIPheZuc44517_3993.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG3285.
HOGENOM	HOG000222509.
KO	K01971.
OMA	VSMPITW.
ProtClustDB	PRK05972.
Enzyme and pathway databases
BioCyc	PZUC450851:GHUG-3302-MONOMER.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR014146. DNA_pol_LigD_ligase_dom. IPR014144. LigD_PE_domain. IPR014145. LigD_pol. IPR012340. NA-bd_OB-fold. IPR014143. NHEJ_ligase_prk. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. PF13298. LigD_N. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMs	TIGR02777. LigD_PE_dom. 1 hit. TIGR02778. ligD_pol. 1 hit. TIGR02779. NHEJ_ligase_lig. 1 hit. TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITE	PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

B4RAS0_PHEZH

Accession

Primary (citable) accession number: B4RAS0

Entry history

Integrated into UniProtKB/TrEMBL:	September 23, 2008
Last sequence update:	September 23, 2008
Last modified:	May 1, 2013
This is version 32 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)