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Protein
Submitted name:

ATP-dependent DNA ligase

Gene

PHZ_c3259

Organism
Phenylobacterium zucineum (strain HLK1)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciPZUC450851:GHUG-3302-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:PHZ_c3259Imported
OrganismiPhenylobacterium zucineum (strain HLK1)Imported
Taxonomic identifieri450851 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaCaulobacteralesCaulobacteraceaePhenylobacterium
ProteomesiUP000001868 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi450851.PHZ_c3259.

Family & Domainsi

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiMISSPDK.
OrthoDBiEOG661H49.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol_dom.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B4RAS0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MADKLARYRA MRDFSKTAEP AGAEKTKASR RLRFVIQKHA ATRLHYDFRL
60 70 80 90 100
ELDGVFLSWA VTKGPSLNPA DRRLAVQTED HPLDYGDFEG TIPKGQYGGG
110 120 130 140 150
TVMLWDRGYW EPEGDARAML KKGDLKFTLD GERLKGSWVL VRMKRREREK
160 170 180 190 200
RDNWLLIKHH DGWSVEDHGE FLVEGETSSV ASGRAMDEIE AGKGKGPTKF
210 220 230 240 250
MTGKGRASGK DVWQSNRADP KAPPPAAEKA APAPKLKAAA LPGFVAPQLA
260 270 280 290 300
KSVDRPPQGA GWGHEIKFDG YRLQLRVENG KATLKTRAGL DWTAKFKEIA
310 320 330 340 350
ADAKPLPDGL YDGEACALDH NGSPDFPALQ AALSEDRTAD LVFFVFDALF
360 370 380 390 400
LDGEDLRALP LTERKSRLEA AVAAAGKRLE RRIRYVAHFE TAGDAVLKSA
410 420 430 440 450
CRMSLEGIVS KRLDAPYRSG RSDTWQKSKC RAGHEVVIGG WTGERGQLRS
460 470 480 490 500
LLVGVNRDGK LVYVGRVGTG FGRETVGRVL PRLEKVASDK SPFTGPNAPR
510 520 530 540 550
KSGDINWARP ELVAEIEFAG FTGDGNVRQA SFKGLREDKP AAEVEAETPA
560 570 580 590 600
KTQLAEPAPA GKAKAGPRTA PAKPATKPRA KPRAKPRAGD NVVMGVVLSN
610 620 630 640 650
PDKALWPDDG KGGVVTKLDL ARYLETVGPW MMEHIKGRPC SIIRMPDGIE
660 670 680 690 700
GQQRFFQRHA GKGSSALISE VQVFGDHKPY IQIDRIEALA ALAQIGAVEY
710 720 730 740 750
HPWNCQPGQP EVPGRLVFDL DPDEAIPFQR VIDAAWEVKE RLESLGLAAF
760 770 780 790 800
CKTTGGKGLH VVTPLKAGKG EMDWPTAKAF ARDVCLAIAA DAPDRYVVNM
810 820 830 840 850
AKAKRKGRIF LDYLRNDRMS TAVAPLSPRG RPLAPVSFPL TWDQVKTGLE
860 870 880
PKRWTIRTAP ALLKKTKAWA DYCDAERPLK DAIRKLK
Length:887
Mass (Da):97,425
Last modified:September 23, 2008 - v1
Checksum:i134DDB14B92DA028
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000747 Genomic DNA. Translation: ACG79668.1.
RefSeqiYP_002132097.1. NC_011144.1.

Genome annotation databases

EnsemblBacteriaiACG79668; ACG79668; PHZ_c3259.
KEGGipzu:PHZ_c3259.
PATRICi22929874. VBIPheZuc44517_3993.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000747 Genomic DNA. Translation: ACG79668.1.
RefSeqiYP_002132097.1. NC_011144.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi450851.PHZ_c3259.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACG79668; ACG79668; PHZ_c3259.
KEGGipzu:PHZ_c3259.
PATRICi22929874. VBIPheZuc44517_3993.

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiMISSPDK.
OrthoDBiEOG661H49.

Enzyme and pathway databases

BioCyciPZUC450851:GHUG-3302-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol_dom.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Complete genome of Phenylobacterium zucineum - a novel facultative intracellular bacterium isolated from human erythroleukemia cell line K562."
    Luo Y., Xu X., Ding Z., Liu Z., Zhang B., Yan Z., Sun J., Hu S., Hu X.
    BMC Genomics 9:386-386(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: HLK1Imported.

Entry informationi

Entry nameiB4RAS0_PHEZH
AccessioniPrimary (citable) accession number: B4RAS0
Entry historyi
Integrated into UniProtKB/TrEMBL: September 23, 2008
Last sequence update: September 23, 2008
Last modified: April 29, 2015
This is version 43 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.