B4RAH3 (B4RAH3_PHEZH) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Topoisomerase IV, subunit B EMBL ACG77980.1

Gene names

Name:	parE EMBL ACG77980.1
Ordered Locus Names:	PHZ_c1569

Organism

Phenylobacterium zucineum (strain HLK1) [Complete proteome] [HAMAP]

Taxonomic identifier

450851 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Alphaproteobacteria › Caulobacterales › Caulobacteraceae › Phenylobacterium

Protein attributes

Sequence length	684 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the type II topoisomerase family. RuleBase RU000380

Ontologies

Keywords
Ligand	ATP-binding RuleBase RU000380 SAAS SAAS002288 Nucleotide-binding
Molecular function	Isomerase Topoisomerase RuleBase RU000380 SAAS SAAS002288
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	DNA topological change Inferred from electronic annotation. Source: InterPro
Cellular component	chromosome Inferred from electronic annotation. Source: InterPro
Molecular function	ATP binding Inferred from electronic annotation. Source: UniProtKB-KW DNA topoisomerase (ATP-hydrolyzing) activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	B4RAH3 [UniParc]. Last modified September 23, 2008. Version 1. Checksum: 271B2276C0A19315	FASTA	684	74,368
	10 20 30 40 50 60 MSPKSTAQAS LFDEALNPAP AAPLAESHEP RPDPAVVGVK TSGYSAADIE VLEGLEPVRK 70 80 90 100 110 120 RPGMYIGGTD ERALHHLFAE VLDNAMDEAV AGHAKVIEVS LDADGALTVR DDGRGIPVDP 130 140 150 160 170 180 HPKHPGKSAL EVIMTVLHSG GKFSGKAYET SGGLHGVGVS VVNALSERVE VTVFKDGFEW 190 200 210 220 230 240 RQAFTRGKPL GGIEKIGPTR KKGTAISFLP DPVIFGDGAA FKPARLYRMA RSKAYLFGGV 250 260 270 280 290 300 EIRWKCDPAR IHDQTPAEAV FRFPNGLADF LAERIKGLET VTPEPFTGRY ERPGEAGKVE 310 320 330 340 350 360 WAIAWTPAGF GEADSFMQSY CNTVPTPEGG THESGLRAAL TKGLKQYAEL VGEKRGGLIT 370 380 390 400 410 420 ADDVVAQAGA LVSVFIRDPE FQGQTKEKLS STEAQRLVEK ALADPFDHWL TAQPKAAGAL 430 440 450 460 470 480 LQFVVERAEE RLKRRRDKEV ARASATRKLR LPGKLADCAG NAIDGAELFL VEGDSAGGSA 490 500 510 520 530 540 KQARDRKNQA ILPLRGKILN VASASTDKFG GNKELSDLLL ALGVQPGSKF KEDDLRYERI 550 560 570 580 590 600 IIMTDADVDG AHIASLLITF FFRTMPDMIR AGRLYLALPP LYRISHGGKA VYARDDAHRD 610 620 630 640 650 660 ELLATEFKGK KPEISRFKGL GEMMPNQLKE TTMDPKTRTL ARVTLPRAEE TVEDLVEALM 670 680 GRKPELRFRF IQENAEFAAA DLDI

References

[1]

"Complete genome of Phenylobacterium zucineum - a novel facultative intracellular bacterium isolated from human erythroleukemia cell line K562." Luo Y., Xu X., Ding Z., Liu Z., Zhang B., Yan Z., Sun J., Hu S., Hu X. BMC Genomics 9:386-386(2008) [PubMed: 18700039] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000747 Genomic DNA. Translation: ACG77980.1.
RefSeq	YP_002130409.1. NC_011144.1.
3D structure databases
ProteinModelPortal	B4RAH3.
ModBase	Search...
Protein-protein interaction databases
STRING	B4RAH3.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	6791076.
GenomeReviews	Gene locus PHZ_c1569 in contig CP000747_GR.
KEGG	pzu:PHZ_c1569.
PATRIC	22926030. VBIPheZuc44517_2093.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HBG304889.
OMA	QARDKEF.
ProtClustDB	PRK05559.
Family and domain databases
InterPro	IPR003594. ATPase-like_ATP-bd. IPR020568. Ribosomal_S5_D2-typ_fold. IPR014721. Ribosomal_S5_D2-typ_fold_subgr. IPR001241. Topo_IIA. IPR013759. Topo_IIA_B/N_ab. IPR002288. Topo_IIA_B_C. IPR013506. Topo_IIA_bsu_dom2. IPR013760. Topo_IIA_cen. IPR018522. TopoIIA_CS. IPR005737. TopoIV_B_Gneg. [Graphical view]
Gene3D	G3DSA:3.30.565.10. ATP_bd_ATPase. 1 hit. G3DSA:3.30.230.10. Ribosomal_S5_D2-type_fold. 1 hit. G3DSA:3.40.50.670. Topo_IIA_B/N_ab. 1 hit.
KO	K02622.
Pfam	PF00204. DNA_gyraseB. 1 hit. PF00986. DNA_gyraseB_C. 1 hit. PF02518. HATPase_c. 1 hit. [Graphical view]
PRINTS	PR00418. TPI2FAMILY.
SMART	SM00387. HATPase_c. 1 hit. SM00433. TOP2c. 1 hit. [Graphical view]
SUPFAM	SSF55874. ATP_bd_ATPase. 1 hit. SSF54211. Ribosomal_S5_D2-typ_fold. 1 hit. SSF56719. Topo_IIA_cen. 1 hit.
TIGRFAMs	TIGR01055. ParE_Gneg. 1 hit.
PROSITE	PS00177. TOPOISOMERASE_II. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

B4RAH3_PHEZH

Accession

Primary (citable) accession number: B4RAH3

Entry history

Integrated into UniProtKB/TrEMBL:	September 23, 2008
Last sequence update:	September 23, 2008
Last modified:	January 25, 2012
This is version 27 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)