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B4R8T9

- SYR_PHEZH

UniProt

B4R8T9 - SYR_PHEZH

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Protein

Arginine--tRNA ligase

Gene

argS

Organism
Phenylobacterium zucineum (strain HLK1)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi

Functioni

Catalytic activityi

ATP + L-arginine + tRNA(Arg) = AMP + diphosphate + L-arginyl-tRNA(Arg).UniRule annotation

GO - Molecular functioni

  1. arginine-tRNA ligase activity Source: UniProtKB-HAMAP
  2. ATP binding Source: UniProtKB-HAMAP

GO - Biological processi

  1. arginyl-tRNA aminoacylation Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Aminoacyl-tRNA synthetase, Ligase

Keywords - Biological processi

Protein biosynthesis

Keywords - Ligandi

ATP-binding, Nucleotide-binding

Enzyme and pathway databases

BioCyciPZUC450851:GHUG-2934-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Arginine--tRNA ligaseUniRule annotation (EC:6.1.1.19UniRule annotation)
Alternative name(s):
Arginyl-tRNA synthetaseUniRule annotation
Short name:
ArgRSUniRule annotation
Gene namesi
Name:argSUniRule annotation
Ordered Locus Names:PHZ_c2895
OrganismiPhenylobacterium zucineum (strain HLK1)
Taxonomic identifieri450851 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaCaulobacteralesCaulobacteraceaePhenylobacterium
ProteomesiUP000001868: Chromosome

Subcellular locationi

Cytoplasm UniRule annotation

GO - Cellular componenti

  1. cytoplasm Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 593593Arginine--tRNA ligasePRO_1000095388Add
BLAST

Interactioni

Subunit structurei

Monomer.UniRule annotation

Protein-protein interaction databases

STRINGi450851.PHZ_c2895.

Structurei

3D structure databases

ProteinModelPortaliB4R8T9.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Motif

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Motifi123 – 13311"HIGH" regionAdd
BLAST

Sequence similaritiesi

Belongs to the class-I aminoacyl-tRNA synthetase family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0018.
HOGENOMiHOG000247212.
KOiK01887.
OMAiKCFDILG.
OrthoDBiEOG6JB13C.

Family and domain databases

Gene3Di1.10.730.10. 1 hit.
3.30.1360.70. 1 hit.
3.40.50.620. 1 hit.
HAMAPiMF_00123. Arg_tRNA_synth.
InterProiIPR001412. aa-tRNA-synth_I_CS.
IPR001278. Arg-tRNA-ligase.
IPR005148. Arg-tRNA-synth_N.
IPR008909. DALR_anticod-bd.
IPR014729. Rossmann-like_a/b/a_fold.
IPR009080. tRNAsynth_1a_anticodon-bd.
[Graphical view]
PANTHERiPTHR11956. PTHR11956. 1 hit.
PfamiPF03485. Arg_tRNA_synt_N. 1 hit.
PF05746. DALR_1. 1 hit.
PF00750. tRNA-synt_1d. 1 hit.
[Graphical view]
PRINTSiPR01038. TRNASYNTHARG.
SMARTiSM01016. Arg_tRNA_synt_N. 1 hit.
SM00836. DALR_1. 1 hit.
[Graphical view]
SUPFAMiSSF47323. SSF47323. 1 hit.
SSF55190. SSF55190. 1 hit.
TIGRFAMsiTIGR00456. argS. 1 hit.
PROSITEiPS00178. AA_TRNA_LIGASE_I. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B4R8T9-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MSDLKTALGE AVEAAFAAEG VPAELARVTA SDRPDLADFQ SNGALAAAKR
60 70 80 90 100
VGKNPREIAT AVAGRLQGDP RLASVEIAGP GFLNLKVADA ALAARADAIA
110 120 130 140 150
ADPRAGAGTV PAPRRVIVDY GGPNVAKPMH VGHLRASIIG ESVKRLYRFR
160 170 180 190 200
GDTVIGDAHF GDWGYQMGLL IGAVCDEDAE IRALVDQLNA SGDPNGEIPA
210 220 230 240 250
AFERVTLADL DRLYPLAAAK GKEDPAYRDR ARKLTADLQA HKPGCYLLWR
260 270 280 290 300
RFRDVTQVAL ERDFHALGVD FDWWKGESDV DHLIQPMVAE LADKGLLVDD
310 320 330 340 350
QGARIVRVAR EGDKRELPPL LVVSSEGSAM YGTTDLATIL DRKREFDPQL
360 370 380 390 400
VIYCVDQRQA DHFEIVFRAA YLAGYAEEGQ LEHIGFGTMN GTDGKPFKTR
410 420 430 440 450
EGGVLKLADL IEMTRSKARE RLHEAGLGED LPAEEFEDIA GKVAVAALKF
460 470 480 490 500
ADLSNFRGTS YVFDLDRFTS FEGKTGPYLL YQAVRVKSLL RKAEAEGAQA
510 520 530 540 550
GPVTVAEPAE RDLVLTLDAF ETALQEAYDK KAPNALAEHA YRLSQAFSKF
560 570 580 590
YAACPILAAP PPVRGSRLTL AQATLRQLEL ALDILGIAVP ERM
Length:593
Mass (Da):64,241
Last modified:September 23, 2008 - v1
Checksum:i27945A89A03EC77D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000747 Genomic DNA. Translation: ACG79304.1.
RefSeqiWP_012523442.1. NC_011144.1.
YP_002131733.1. NC_011144.1.

Genome annotation databases

EnsemblBacteriaiACG79304; ACG79304; PHZ_c2895.
GeneIDi6788842.
KEGGipzu:PHZ_c2895.
PATRICi22929044. VBIPheZuc44517_3582.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000747 Genomic DNA. Translation: ACG79304.1 .
RefSeqi WP_012523442.1. NC_011144.1.
YP_002131733.1. NC_011144.1.

3D structure databases

ProteinModelPortali B4R8T9.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 450851.PHZ_c2895.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ACG79304 ; ACG79304 ; PHZ_c2895 .
GeneIDi 6788842.
KEGGi pzu:PHZ_c2895.
PATRICi 22929044. VBIPheZuc44517_3582.

Phylogenomic databases

eggNOGi COG0018.
HOGENOMi HOG000247212.
KOi K01887.
OMAi KCFDILG.
OrthoDBi EOG6JB13C.

Enzyme and pathway databases

BioCyci PZUC450851:GHUG-2934-MONOMER.

Family and domain databases

Gene3Di 1.10.730.10. 1 hit.
3.30.1360.70. 1 hit.
3.40.50.620. 1 hit.
HAMAPi MF_00123. Arg_tRNA_synth.
InterProi IPR001412. aa-tRNA-synth_I_CS.
IPR001278. Arg-tRNA-ligase.
IPR005148. Arg-tRNA-synth_N.
IPR008909. DALR_anticod-bd.
IPR014729. Rossmann-like_a/b/a_fold.
IPR009080. tRNAsynth_1a_anticodon-bd.
[Graphical view ]
PANTHERi PTHR11956. PTHR11956. 1 hit.
Pfami PF03485. Arg_tRNA_synt_N. 1 hit.
PF05746. DALR_1. 1 hit.
PF00750. tRNA-synt_1d. 1 hit.
[Graphical view ]
PRINTSi PR01038. TRNASYNTHARG.
SMARTi SM01016. Arg_tRNA_synt_N. 1 hit.
SM00836. DALR_1. 1 hit.
[Graphical view ]
SUPFAMi SSF47323. SSF47323. 1 hit.
SSF55190. SSF55190. 1 hit.
TIGRFAMsi TIGR00456. argS. 1 hit.
PROSITEi PS00178. AA_TRNA_LIGASE_I. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Complete genome of Phenylobacterium zucineum - a novel facultative intracellular bacterium isolated from human erythroleukemia cell line K562."
    Luo Y., Xu X., Ding Z., Liu Z., Zhang B., Yan Z., Sun J., Hu S., Hu X.
    BMC Genomics 9:386-386(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: HLK1.

Entry informationi

Entry nameiSYR_PHEZH
AccessioniPrimary (citable) accession number: B4R8T9
Entry historyi
Integrated into UniProtKB/Swiss-Prot: March 24, 2009
Last sequence update: September 23, 2008
Last modified: November 26, 2014
This is version 39 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Aminoacyl-tRNA synthetases
    List of aminoacyl-tRNA synthetase entries
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3