Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Basket 0
(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

B4LQ24

- CALYP_DROVI

UniProt

B4LQ24 - CALYP_DROVI

Protein

Ubiquitin carboxyl-terminal hydrolase calypso

Gene

calypso

Organism
Drosophila virilis (Fruit fly)
Status
Reviewed - Annotation score: 3 out of 5- Protein inferred from homologyi
    • BLAST
    • Align
    • Format
    • Add to basket
    • History
      Entry version 31 (01 Oct 2014)
      Sequence version 1 (23 Sep 2008)
      Previous versions | rss
    • Help video
    • Feedback
    • Comment

    Functioni

    Polycomb group (PcG) protein. Catalytic component of the PR-DUB complex, a complex that specifically mediates deubiquitination of histone H2A monoubiquitinated at 'Lys-118' (H2AK118ub1). Does not deubiquitinate monoubiquitinated histone H2B. Required to maintain the transcriptionally repressive state of homeotic genes throughout development. The PR-DUB complex has weak or no activity toward 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains By similarity.By similarity

    Catalytic activityi

    Thiol-dependent hydrolysis of ester, thioester, amide, peptide and isopeptide bonds formed by the C-terminal Gly of ubiquitin (a 76-residue protein attached to proteins as an intracellular targeting signal).

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Active sitei115 – 1151NucleophileBy similarity
    Active sitei197 – 1971Proton donorBy similarity
    Sitei212 – 2121Important for enzyme activityBy similarity

    GO - Molecular functioni

    1. chromatin binding Source: UniProtKB
    2. ubiquitin-specific protease activity Source: UniProtKB
    3. ubiquitin thiolesterase activity Source: UniProtKB

    GO - Biological processi

    1. chromatin silencing Source: UniProtKB
    2. monoubiquitinated histone H2A deubiquitination Source: UniProtKB
    3. ubiquitin-dependent protein catabolic process Source: InterPro

    Keywords - Molecular functioni

    Chromatin regulator, Hydrolase, Protease, Thiol protease

    Keywords - Biological processi

    Ubl conjugation pathway

    Protein family/group databases

    MEROPSiC12.A09.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Ubiquitin carboxyl-terminal hydrolase calypso (EC:3.4.19.12)
    Alternative name(s):
    BAP1 homolog
    Gene namesi
    Name:calypso
    ORF Names:GJ20906
    OrganismiDrosophila virilis (Fruit fly)
    Taxonomic identifieri7244 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaEcdysozoaArthropodaHexapodaInsectaPterygotaNeopteraEndopterygotaDipteraBrachyceraMuscomorphaEphydroideaDrosophilidaeDrosophila
    ProteomesiUP000008792: Unassembled WGS sequence

    Organism-specific databases

    FlyBaseiFBgn0208042. Dvir\GJ20906.

    Subcellular locationi

    Nucleus By similarity
    Note: Localizes to PcG response elements (PREs).By similarity

    GO - Cellular componenti

    1. nuclear chromatin Source: UniProtKB
    2. PR-DUB complex Source: UniProtKB

    Keywords - Cellular componenti

    Nucleus

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 462462Ubiquitin carboxyl-terminal hydrolase calypsoPRO_0000395834Add
    BLAST

    Interactioni

    Subunit structurei

    Component of the PR-DUB complex, at least composed of calypso and Asx.By similarity

    Protein-protein interaction databases

    STRINGi7244.FBpp0235323.

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the peptidase C12 family. BAP1 subfamily.Curated

    Phylogenomic databases

    eggNOGiNOG249036.
    InParanoidiB4LQ24.
    KOiK08588.
    OMAiTDKFRRV.
    OrthoDBiEOG7GN2M2.
    PhylomeDBiB4LQ24.

    Family and domain databases

    Gene3Di3.40.532.10. 1 hit.
    InterProiIPR001578. Peptidase_C12_UCH.
    [Graphical view]
    PANTHERiPTHR10589. PTHR10589. 1 hit.
    PfamiPF01088. Peptidase_C12. 1 hit.
    [Graphical view]
    PRINTSiPR00707. UBCTHYDRLASE.

    Sequencei

    Sequence statusi: Complete.

    B4LQ24-1 [UniParc]FASTAAdd to Basket

    « Hide

    MNVAGGGTGT TAGSAGNNNT LPMAQLADGW LELESDPGLF TLLLEDFGCH    50
    DVQVEEVYDL QKPIESPYGF IFLFRWIEER RARRKIVETT AEIFVKDEEA 100
    ISSIFFAQQV VPNSCATHAL LSVLLNCNEN NLQLGETLSR LKAHTKGMSP 150
    ENKGLAIGNT PELACAHNSH AMPQARRRLE RTGAGVASCR FTGEAFHFVS 200
    FVPINGQLFE LDGLKPYPMN HGCWEEHEDW TDKFRRVMAE RLGIATGEQD 250
    IRFNLMAVVP DRRIAITHKL KMLRTNQAIV SGTLQKLLKA DEQGERDEQQ 300
    RPDTPNTLLE PSAFTARDLQ SLLKNLDTEI AINEQHLADE NDRRQMFKVD 350
    ASRRTHNYDK FICTFLTMLA HQGVLGELVS QHLLPSKKIS GQSAANRLNK 400
    QNSAAASTAN SSAGATAGGA KSQQQQQQQQ QPQQPQTPKN GKSPGKTPGR 450
    RRKGRNKCRK RK 462
    Length:462
    Mass (Da):51,378
    Last modified:September 23, 2008 - v1
    Checksum:i8B4F7B38F50D8F2E
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CH940648 Genomic DNA. Translation: EDW60347.1.
    RefSeqiXP_002049154.1. XM_002049118.1.

    Genome annotation databases

    EnsemblMetazoaiFBtr0236831; FBpp0235323; FBgn0208042.
    GeneIDi6626878.
    KEGGidvi:Dvir_GJ20906.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CH940648 Genomic DNA. Translation: EDW60347.1 .
    RefSeqi XP_002049154.1. XM_002049118.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 7244.FBpp0235323.

    Protein family/group databases

    MEROPSi C12.A09.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblMetazoai FBtr0236831 ; FBpp0235323 ; FBgn0208042 .
    GeneIDi 6626878.
    KEGGi dvi:Dvir_GJ20906.

    Organism-specific databases

    FlyBasei FBgn0208042. Dvir\GJ20906.

    Phylogenomic databases

    eggNOGi NOG249036.
    InParanoidi B4LQ24.
    KOi K08588.
    OMAi TDKFRRV.
    OrthoDBi EOG7GN2M2.
    PhylomeDBi B4LQ24.

    Family and domain databases

    Gene3Di 3.40.532.10. 1 hit.
    InterProi IPR001578. Peptidase_C12_UCH.
    [Graphical view ]
    PANTHERi PTHR10589. PTHR10589. 1 hit.
    Pfami PF01088. Peptidase_C12. 1 hit.
    [Graphical view ]
    PRINTSi PR00707. UBCTHYDRLASE.
    ProtoNeti Search...

    Publicationsi

    1. "Evolution of genes and genomes on the Drosophila phylogeny."
      Drosophila 12 genomes consortium
      Nature 450:203-218(2007) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: Tucson 15010-1051.87.

    Entry informationi

    Entry nameiCALYP_DROVI
    AccessioniPrimary (citable) accession number: B4LQ24
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: July 13, 2010
    Last sequence update: September 23, 2008
    Last modified: October 1, 2014
    This is version 31 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programDrosophila annotation project

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Drosophila
      Drosophila: entries, gene names and cross-references to FlyBase
    2. Peptidase families
      Classification of peptidase families and list of entries
    3. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3