Skip Header

You are using a version of Internet Explorer that may not display all features of this website. Please upgrade to a modern browser.
Contribute Send feedback
Read comments (?) or add your own

B4JRF5 (B4JRF5_DROGR) Unreviewed, UniProtKB/TrEMBL

Last modified December 11, 2013. Version 42. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry infoCustomize order

Protein attributes

Sequence length799 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

ATP + (deoxyribonucleotide)(n) + (deoxyribonucleotide)(m) = AMP + diphosphate + (deoxyribonucleotide)(n+m). RuleBase RU000617

Sequence similarities

Belongs to the ATP-dependent DNA ligase family.

Sequences

Sequence LengthMass (Da)Tools
B4JRF5 [UniParc].

Last modified September 23, 2008. Version 1.
Checksum: 0B8C04D429E52EE5

FASTA79989,446
        10         20         30         40         50         60 
MGSKQAQNED NKLDTFRHIC DEIAGESSYL RKVEKLEHFF KKGSSGSGFQ GDTLQWVQFL 

        70         80         90        100        110        120 
IPGATQRVYN LQNKALLKLF ARILHVDQQQ MNLDLEQDGD ISETLRKHFA GSSKLKPQAQ 

       130        140        150        160        170        180 
SKLYLHEVET LLCQLEQRTK EDEQTEVLHA LCKQATDLDL RTFIRLIKQD LRINARARHI 

       190        200        210        220        230        240 
LDAFGPQAYP AYQSSRDLTA IVENFAGSQD TSTAPKTPAK AAGGKKMKVA SSGIQVMTPV 

       250        260        270        280        290        300 
SPMLANACKS VEEAFKKNPD GLYSEIKYDG ERVQIHKQGD EFKFFSRNLK PVMDHKIKDL 

       310        320        330        340        350        360 
KDYIPRAFPG ADDMILDSEI ILVDTETGSL LPFGTLGAHK KHTFENASVC LFVFDCLLYD 

       370        380        390        400        410        420 
GDDLTQVEFR KRREILEKNI KPIKSHVQLS ESEFLKTKKE LALMTAKVLQ ANLEGVVLKN 

       430        440        450        460        470        480 
PAGTYQPGKR NWLKVKKDYL FGGKMADTAD LVVLGAWYGS GKKGGVLSIF LMGCFDARDH 

       490        500        510        520        530        540 
LWKTVTKVHS GLDDVTNDDV HEALMKLTDR ADANKIPSWL LCKKALVPDV LAKVPEQMPV 

       550        560        570        580        590        600 
WEITGAEFTQ SEAHTAAGIS IRFPRITRLR SDKSAMQAND LEHLEQLYAA SKQNVNVDLL 

       610        620        630        640        650        660 
LANSEPDSND TLENKLKVEK TPTKSKTIKA SLTSSSKKAK RSKNDTDDEE AAPSKGRSTR 

       670        680        690        700        710        720 
KMSKLEAPSS ASQGNLKDFF KPKAIKTEVK NEPTSNSSKS PELLKSESSK LFSGLLANFS 

       730        740        750        760        770        780 
VDAAQSKYMD EFVRHGGTLT MNTQKASLVF HDVTRSVDLT QLRPLYHRSC RHLSVKWLET 

       790 
SIRAKTLQPY PLYALILKS 

« Hide

References

[1]"Evolution of genes and genomes on the Drosophila phylogeny."
Drosophila 12 genomes consortium
Nature 450:203-218(2007) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Tucson 15287-2541.00.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CH916373 Genomic DNA. Translation: EDV94345.1.
RefSeqXP_001993609.1. XM_001993573.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING7222.FBpp0154059.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaFBtr0155567; FBpp0154059; FBgn0127617.
GeneID6567229.
KEGGdgr:Dgri_GH20153.

Organism-specific databases

FlyBaseFBgn0127617. Dgri\GH20153.

Phylogenomic databases

eggNOGCOG1793.
InParanoidB4JRF5.
KOK10776.
OMANEDNKLD.
OrthoDBEOG7BKCT2.

Family and domain databases

Gene3D1.10.3260.10. 1 hit.
2.40.50.140. 1 hit.
InterProIPR001357. BRCT_dom.
IPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR00574. dnl1. 1 hit.
PROSITEPS50172. BRCT. 1 hit.
PS00697. DNA_LIGASE_A1. 1 hit.
PS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameB4JRF5_DROGR
AccessionPrimary (citable) accession number: B4JRF5
Entry history
Integrated into UniProtKB/TrEMBL: September 23, 2008
Last sequence update: September 23, 2008
Last modified: December 11, 2013
This is version 42 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)