Skip Header

You are using a version of Internet Explorer that may not display all features of this website. Please upgrade to a modern browser.
Contribute Send feedback
Read comments (?) or add your own

B4J642 (B4J642_DROGR) Unreviewed, UniProtKB/TrEMBL

Last modified June 11, 2014. Version 44. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry infoCustomize order

Protein attributes

Sequence length674 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

ATP + (deoxyribonucleotide)(n) + (deoxyribonucleotide)(m) = AMP + diphosphate + (deoxyribonucleotide)(n+m). RuleBase RU000617

Sequence similarities

Belongs to the ATP-dependent DNA ligase family.

Sequences

Sequence LengthMass (Da)Tools
B4J642 [UniParc].

Last modified September 23, 2008. Version 1.
Checksum: 31302D18EA11CE00

FASTA67476,917
        10         20         30         40         50         60 
MDEPMEPLPS KQKIISLTSD SNESEGTDIY NPSLELYHPI NHAYWRAEGV TPYLALARTF 

        70         80         90        100        110        120 
QVIEETKGRL KMIDILSNFF CSVMMVSPED LVPCVYLSIN QLAPAYEGLE LGVAETTLMK 

       130        140        150        160        170        180 
AICKATGRNL AHIKSQTQLI GDLGIVAEQS RVSQRMMFRP KPLNVRAVFA KLKEIANISG 

       190        200        210        220        230        240 
QSKITLVYDI FVACRLSEAR FFIRSLIGKL RIGIAEQSLL TALAIALVKK LHINDCKRID 

       250        260        270        280        290        300 
KVAEIYKDEI AETTLILKTT FCQCPNYDII IPAILKYDIE ELQERCPMHP GMPLRPMLAQ 

       310        320        330        340        350        360 
PTKGVHEVLE RFSGMHITCE WKYDGERAQI HLNEQGEISI FSRNSENNTP KYPDLIARSK 

       370        380        390        400        410        420 
PILKTEVKSY ILDSEIVAWD IERKQILPFQ ILSTRKRKNV DIDDIKVQVC VYIFDLLYIN 

       430        440        450        460        470        480 
GKSLVTQPLS ERRKILFEHF QEVEGEWKFA TALNTNDMDE VQQFLEESIK GNCEGLMVKT 

       490        500        510        520        530        540 
LDEEATYEIA KRSRNWLKLK KDYLSNVGDS LDLVVIGGYK GKGRRTGIYG GFLLACYDTD 

       550        560        570        580        590        600 
NEEYQTICKI GTGFTDEDLR QHSEFFSTNK LSEAKSYFRY DSSLEPDDWF EPCQVWEVKC 

       610        620        630        640        650        660 
ADLSLSPIHR AGIGIVDAER GISLRFPRFI RIRDDKSPEN ATDANQVAHM YSSQDVVKNN 

       670 
QKSSNSMDLE SDFY 

« Hide

References

[1]"Evolution of genes and genomes on the Drosophila phylogeny."
Drosophila 12 genomes consortium
Nature 450:203-218(2007) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Tucson 15287-2541.00.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CH916367 Genomic DNA. Translation: EDW01900.1.
RefSeqXP_001987033.1. XM_001986997.1.

3D structure databases

ProteinModelPortalB4J642.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING7222.FBpp0154098.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaFBtr0155606; FBpp0154098; FBgn0127656.
GeneID6559920.
KEGGdgr:Dgri_GH20192.

Organism-specific databases

FlyBaseFBgn0127656. Dgri\GH20192.

Phylogenomic databases

eggNOGCOG1793.
InParanoidB4J642.
KOK10747.
OMAMVKMLEG.
OrthoDBEOG7RFTGN.
PhylomeDBB4J642.

Family and domain databases

Gene3D1.10.3260.10. 1 hit.
2.40.50.140. 1 hit.
InterProIPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR00574. dnl1. 1 hit.
PROSITEPS00697. DNA_LIGASE_A1. 1 hit.
PS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameB4J642_DROGR
AccessionPrimary (citable) accession number: B4J642
Entry history
Integrated into UniProtKB/TrEMBL: September 23, 2008
Last sequence update: September 23, 2008
Last modified: June 11, 2014
This is version 44 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)