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B4F972 (B4F972_MAIZE) Unreviewed, UniProtKB/TrEMBL

Last modified March 19, 2014. Version 34. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names

Uncharacterized protein EMBL ACF78665.1
OrganismZea mays (Maize) EMBL ACF78665.1
Taxonomic identifier4577 [NCBI]
Taxonomic lineageEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaePACMAD cladePanicoideaeAndropogoneaeZea

Protein attributes

Sequence length493 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

General annotation (Comments)

Cofactor

Pyridoxal phosphate By similarity. RuleBase RU000382

Sequence similarities

Belongs to the group II decarboxylase family. RuleBase RU000382

Ontologies

Keywords
   LigandPyridoxal phosphate RuleBase RU000382
   Molecular functionLyase RuleBase RU000382
Gene Ontology (GO)
   Biological_processglutamate metabolic process

Inferred from electronic annotation. Source: InterPro

   Cellular_componentcytosol

Inferred from electronic annotation. Source: EnsemblPlants/Gramene

nucleus

Inferred from electronic annotation. Source: EnsemblPlants/Gramene

   Molecular_functionglutamate decarboxylase activity

Inferred from electronic annotation. Source: InterPro

pyridoxal phosphate binding

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
B4F972 [UniParc].

Last modified September 23, 2008. Version 1.
Checksum: 8326A67C908635C2

FASTA49355,219
        10         20         30         40         50         60 
MVLSHGVGGS DESVHSTFAS RYVRTSLPRY RMPEQSIPKE AAYQIINDEL MLDGNPRLNL 

        70         80         90        100        110        120 
ASFVTTWMEP ECDKLIQASV NKNYVDMDEY PVTTELQNRC VNMIAHLFNA PLGDAETAVG 

       130        140        150        160        170        180 
VGTVGSSEAI MLAGLAFKRR WQNKMKAAGK PCDKPNIVTG ANVQVCWEKF ARYFEVELKE 

       190        200        210        220        230        240 
VKLSDGYYVM DPQKAVDMVD ENTICVAAIL GSTLNGEFED VKLLNDLLTK KNAETGWDTP 

       250        260        270        280        290        300 
IHVDAASGGF IAPFLYPELE WDFRLPLVKS INVSGHKYGL VYAGIGWCIW RTKVDLPEEL 

       310        320        330        340        350        360 
IFHINYLGAD QPTFTLNFSK GSSQVIAQYY QLIRLGFEGY KNIMENCQEN ATVLKQGLEK 

       370        380        390        400        410        420 
TGKFNIVSKD NGVPLVAFSL KDSSRHSEFE ISDFLRRFGW IVPAYTMPPD AQHVTVLRVV 

       430        440        450        460        470        480 
IREDFSRTLA ERLVLDIEKV LHELDALPAR VPSGDLAALA AAESSEREME KQRQVISLWK 

       490 
RAVLAKKKTN GVC 

« Hide

References

[1]"Insights into corn genes derived from large-scale cDNA sequencing."
Alexandrov N.N., Brover V.V., Freidin S., Troukhan M.E., Tatarinova T.V., Zhang H., Swaller T.J., Lu Y.-P., Bouck J., Flavell R.B., Feldmann K.A.
Plant Mol. Biol. 69:179-194(2009) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
[2]"Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs."
Soderlund C., Descour A., Kudrna D., Bomhoff M., Boyd L., Currie J., Angelova A., Collura K., Wissotski M., Ashley E., Morrow D., Fernandes J., Walbot V., Yu Y.
PLoS Genet. 5:E1000740-E1000740(2009) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: B73 EMBL ACF78665.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
BT033660 mRNA. Translation: ACF78665.1.
BT042724 mRNA. Translation: ACF87729.1.
EU954500 mRNA. Translation: ACG26618.1.
BT087213 mRNA. Translation: ACR37566.1.
RefSeqNP_001130451.1. NM_001136979.1.
UniGeneZm.8186.

3D structure databases

ProteinModelPortalB4F972.
ModBaseSearch...
MobiDBSearch...

Proteomic databases

PRIDEB4F972.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID100191549.
KEGGzma:100191549.

Organism-specific databases

GrameneB4F972.

Phylogenomic databases

HOGENOMHOG000070228.
KOK01580.
OMAVISLWKR.

Family and domain databases

Gene3D3.40.640.10. 1 hit.
InterProIPR010107. Glutamate_decarboxylase.
IPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
[Graphical view]
PANTHERPTHR11999:SF1. PTHR11999:SF1. 1 hit.
PfamPF00282. Pyridoxal_deC. 1 hit.
[Graphical view]
SUPFAMSSF53383. SSF53383. 1 hit.
TIGRFAMsTIGR01788. Glu-decarb-GAD. 1 hit.
ProtoNetSearch...

Entry information

Entry nameB4F972_MAIZE
AccessionPrimary (citable) accession number: B4F972
Entry history
Integrated into UniProtKB/TrEMBL: September 23, 2008
Last sequence update: September 23, 2008
Last modified: March 19, 2014
This is version 34 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)