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B4F6N5 (B4F6N5_XENTR) Unreviewed, UniProtKB/TrEMBL

Last modified April 3, 2013. Version 34. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length893 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

General annotation (Comments)

Catalytic activity

ATP + (deoxyribonucleotide)(n) + (deoxyribonucleotide)(m) = AMP + diphosphate + (deoxyribonucleotide)(n+m). RuleBase RU000617

Sequence similarities

Belongs to the ATP-dependent DNA ligase family. RuleBase RU004196

Sequences

Sequence LengthMass (Da)Tools
B4F6N5 [UniParc].

Last modified September 23, 2008. Version 1.
Checksum: 797F437FB781E248

FASTA893100,464
        10         20         30         40         50         60 
MRAFLRLLAY QTKRTLGQSL TKVPLRVIFH ACWSQSPLHS ALHFQFFLRV THFSNMAEQR 

        70         80         90        100        110        120 
YCVEYAKRGT AGCKKCKEKI GKGLVRIGKI VPNPFSESAG DMKEWYHIKC MFEKLERARA 

       130        140        150        160        170        180 
TTKKIDDLTE LEGWQELQDC DKNLISQHVT ELATKTAATP RKKTPSKEKQ SPAVQGTTST 

       190        200        210        220        230        240 
TAPAASPSLK FSGFSAKPSQ SSSPPSSSTG SSLSTAKCDP KHKDCLLREF RKLCAMVAEQ 

       250        260        270        280        290        300 
PSYNSKTQII RDFLTKGTSG DGFHGDTYLT VKLLLPGVIK SVYNLNDKQI VKHFSRIFNC 

       310        320        330        340        350        360 
NQEEMVRDLE QGDVSETVRI FFEESKCFAP ASKSLLTIHE VDDLLTKLSK MTKEEDQQNV 

       370        380        390        400        410        420 
LEDIAHRCTS NDLKCIIRLI KHDLKMNSGA KHVLDALDPN AYDAFKASRN LGDVVERVLR 

       430        440        450        460        470        480 
NEQQAPGMKR TLSVQASLMT PVQPMLAEAC KSIEYAMKKC PNGMYAEIKY DGERVQVHKN 

       490        500        510        520        530        540 
GDHFSYFSRS LKPVLPHKVA HFKDFIPKAF PGGNSMILDA EVLLIDTNTG KPLPFGTLGV 

       550        560        570        580        590        600 
HKKAAFKDAN VCLFVFDCIY FNGVSLMDRP LSERRKFMRD NMVEIPNHIL FSEMKHVTKA 

       610        620        630        640        650        660 
SDLADMITRV IREGLEGLVL KDLKSNYEPG KRHWLKVKKD YLNEGAMADT ADLAVLGAYY 

       670        680        690        700        710        720 
GKGANGGIMS IFLMGCYDPE SQKWCTVTKC SSGYDDATLQ RLQKELNMVK ISKDPSKIPS 

       730        740        750        760        770        780 
WLKINKNYFP DFIIHDPKKA PIWEITGAEY SKAEAHTAAG LSIRFPRCTR FRDDKDWKTA 

       790        800        810        820        830        840 
TTLQQLKELY RLSKEKSDFN ITATSSQDED GSSESSSREN EGNSRQTASG SMVKKSKNAP 

       850        860        870        880        890 
SKSPGKDKTS ESTKLPPPQK KEELPKAEKR KSQTPKTVQS KKVRKQHIEK CIQ

« Hide

References

[1]NIH - Xenopus Gene Collection (XGC) project
Submitted (JUL-2008) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Strain: N6 EMBL AAI67946.1.
Tissue: Fat body EMBL AAI67946.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		BC167946 mRNA. Translation: AAI67946.1.
RefSeqNP_001016351.2. NM_001016351.3.
UniGeneStr.52925.

3D structure databases

ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID549105.
KEGGxtr:549105.

Organism-specific databases

CTD3980.
XenbaseXB-GENE-5788004. lig3.

Phylogenomic databases

eggNOGCOG1793.
HOGENOMHOG000007653.
HOVERGENHBG005515.
KOK10776.

Family and domain databases

Gene3D1.10.3260.10. 1 hit.
2.40.50.140. 1 hit.
3.30.1740.10. 1 hit.
InterProIPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
IPR001510. Znf_PARP.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
PF00645. zf-PARP. 1 hit.
[Graphical view]
SUPFAMSSF50249. Nucleic_acid_OB. 1 hit.
SSF117018. SSF117018. 1 hit.
TIGRFAMsTIGR00574. dnl1. 1 hit.
PROSITEPS00697. DNA_LIGASE_A1. 1 hit.
PS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
PS00347. PARP_ZN_FINGER_1. 1 hit.
PS50064. PARP_ZN_FINGER_2. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameB4F6N5_XENTR
AccessionPrimary (citable) accession number: B4F6N5
Entry history
Integrated into UniProtKB/TrEMBL: September 23, 2008
Last sequence update: September 23, 2008
Last modified: April 3, 2013
This is version 34 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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