Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

RNA polymerase sigma-54 factor

Gene

rpoN

Organism
Burkholderia cenocepacia (strain ATCC BAA-245 / DSM 16553 / LMG 16656 / NCTC 13227 / J2315 / CF5610) (Burkholderia cepacia (strain J2315))
Status
Unreviewed-Annotation score: -Protein inferred from homologyi

Functioni

Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-bindingUniRule annotation, NucleotidyltransferaseUniRule annotation, Sigma factorUniRule annotation, Transferase
Biological processTranscription, Transcription regulation

Names & Taxonomyi

Protein namesi
Recommended name:
RNA polymerase sigma-54 factorUniRule annotation
Gene namesi
Name:rpoNImported
ORF Names:BCAL0813Imported
OrganismiBurkholderia cenocepacia (strain ATCC BAA-245 / DSM 16553 / LMG 16656 / NCTC 13227 / J2315 / CF5610) (Burkholderia cepacia (strain J2315))Imported
Taxonomic identifieri216591 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesBurkholderiaceaeBurkholderiaBurkholderia cepacia complex
Proteomesi
  • UP000001035 Componenti: Chromosome 1

Subcellular locationi

Keywords - Cellular componenti

DNA-directed RNA polymeraseUniRule annotation

Interactioni

Protein-protein interaction databases

STRINGi216591.BCAL0813

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini137 – 328Sigma54_CBDInterPro annotationAdd BLAST192
Domaini344 – 499Sigma54_DBDInterPro annotationAdd BLAST156

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili341 – 361Sequence analysisAdd BLAST21

Sequence similaritiesi

Belongs to the sigma-54 factor family.UniRule annotation

Keywords - Domaini

Coiled coilSequence analysis

Phylogenomic databases

eggNOGiENOG4105DTW Bacteria
COG1508 LUCA
HOGENOMiHOG000071905
KOiK03092
OMAiVTTQKFM
OrthoDBiPOG091H02EW

Family and domain databases

Gene3Di1.10.10.1330, 1 hit
InterProiView protein in InterPro
IPR000394 RNA_pol_sigma_54
IPR007046 RNA_pol_sigma_54_core-bd
IPR007634 RNA_pol_sigma_54_DNA-bd
IPR038709 RpoN_core-bd_sf
PANTHERiPTHR32248 PTHR32248, 1 hit
PfamiView protein in Pfam
PF00309 Sigma54_AID, 1 hit
PF04963 Sigma54_CBD, 1 hit
PF04552 Sigma54_DBD, 1 hit
PIRSFiPIRSF000774 RpoN, 1 hit
PRINTSiPR00045 SIGMA54FCT
TIGRFAMsiTIGR02395 rpoN_sigma, 1 hit
PROSITEiView protein in PROSITE
PS00717 SIGMA54_1, 1 hit
PS00718 SIGMA54_2, 1 hit

Sequencei

Sequence statusi: Complete.

B4EAS4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKASLQLRLS QHLALTPQLQ QSIRLLQLST LELQQEVAMA VAQNPLLEND
60 70 80 90 100
DEWIASPLRV AADGSLIAQT PPAQNTEPAA TNGSSPSSDR AERDEPAGAD
110 120 130 140 150
EYDGYGSGDG NDGPQWNLDE YGRSSGASDD DDLPPLQVQE AATSLRDHLA
160 170 180 190 200
AQLRVTQAGP RDRALVMFLI ESLDDDGYLT ATLDEVLADL PPELEIDCDE
210 220 230 240 250
LNAALALLHS FDPAGVGARS ASECLKLQLL RLDPSPTRTL ALEIVSQHLE
260 270 280 290 300
LLAARDFTRL RKHLKASDDA LRDAHALIRS LEPFPGAAYG KAEADYVVPD
310 320 330 340 350
IIVKKAGQGW LAELNPEVVP RLRINNLYAN ILRNSRGDPS AGSLKQQLQE
360 370 380 390 400
ARWLIKNIQQ RFDTILRVAQ AIVERQKNFF AHGEIAMRPL VLREIADTLG
410 420 430 440 450
LHESTVSRVT TGKYMLTPFG TLEFKYFFGS HVSTDTGGAA SSTAIRALIK
460 470 480 490 500
QLIGAEDPKS PLSDSRIAEL LAEQGFVVAR RTVAKYREAL KIPAVNLRKS

L
Length:501
Mass (Da):54,736
Last modified:September 23, 2008 - v1
Checksum:i5A13A3024E2DFE9F
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AM747720 Genomic DNA Translation: CAR51119.1
RefSeqiWP_006483132.1, NC_011000.1

Genome annotation databases

EnsemblBacteriaiCAR51119; CAR51119; BCAL0813
KEGGibcj:BCAL0813

Similar proteinsi

Entry informationi

Entry nameiB4EAS4_BURCJ
AccessioniPrimary (citable) accession number: B4EAS4
Entry historyiIntegrated into UniProtKB/TrEMBL: September 23, 2008
Last sequence update: September 23, 2008
Last modified: May 23, 2018
This is version 58 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health