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B4E127

- B4E127_HUMAN

UniProt

B4E127 - B4E127_HUMAN

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Protein
Submitted name:

G/T mismatch-specific thymine DNA glycosylase

Gene

TDG

Organism
Homo sapiens (Human)
Status
Unreviewed - Annotation score: 2 out of 5- Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

  1. DNA N-glycosylase activity Source: Ensembl
  2. mismatched DNA binding Source: InterPro
  3. RNA polymerase II transcription cofactor activity Source: Ensembl

GO - Biological processi

  1. DNA demethylation Source: Ensembl
  2. embryo development Source: Ensembl
  3. mismatch repair Source: InterPro
  4. negative regulation of chromatin binding Source: Ensembl
  5. negative regulation of protein binding Source: Ensembl
  6. negative regulation of transcription from RNA polymerase II promoter Source: Ensembl
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
G/T mismatch-specific thymine DNA glycosylaseImported
Submitted name:
cDNA FLJ50939, highly similar to G/T mismatch-specific thymine DNA glycosylase (EC 3.2.2.-)Imported
Gene namesi
Name:TDGImported
OrganismiHomo sapiens (Human)Imported
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
ProteomesiUP000005640: Chromosome 12

Organism-specific databases

HGNCiHGNC:11700. TDG.

Subcellular locationi

GO - Cellular componenti

  1. nucleus Source: HPA
  2. plasma membrane Source: HPA
  3. PML body Source: Ensembl
Complete GO annotation...

Pathology & Biotechi

Organism-specific databases

PharmGKBiPA36419.

Expressioni

Gene expression databases

ExpressionAtlasiB4E127. baseline and differential.

Structurei

3D structure databases

ProteinModelPortaliB4E127.
SMRiB4E127. Positions 1-189.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

GeneTreeiENSGT00390000000987.
HOVERGENiHBG003685.
KOiK03649.

Family and domain databases

Gene3Di3.40.470.10. 1 hit.
InterProiIPR015637. DNA_glycosylase_G/T-mismatch.
IPR003310. Thymine-DNA_glycosylase.
IPR005122. Uracil-DNA_glycosylase-like.
[Graphical view]
PANTHERiPTHR12159. PTHR12159. 1 hit.
PfamiPF03167. UDG. 1 hit.
[Graphical view]
SUPFAMiSSF52141. SSF52141. 1 hit.
TIGRFAMsiTIGR00584. mug. 1 hit.

Sequencei

Sequence statusi: Complete.

B4E127-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MAAYKGHHYP GPGNHFWKCL FMSGLSEVQL NHMDDHTLPG KYGIGFTNMV
60 70 80 90 100
ERTTPGSKDL SSKEFREGGR ILVQKLQKYQ PRIAVFNGKC IYEIFSKEVF
110 120 130 140 150
GVKVKNLEFG LQPHKIPDTE TLCYVMPSSS ARCAQFPRAQ DKVHYYIKLK
160 170 180 190 200
DLRDQLKGIE RNMDVQEVQY TFDLQLAQED AKKMAVKEEK YDPGYEAAYG
210 220 230 240 250
GAYGENPCSS EPCGFSSNGL IESVELRGES AFSGIPNGQW MTQSFTDQIP
260
SFSNHCGTQE QEEESHA
Length:267
Mass (Da):30,151
Last modified:September 23, 2008 - v1
Checksum:i3AABA331B277FAD8
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC078819 Genomic DNA. No translation available.
AK303631 mRNA. Translation: BAG64639.1.
RefSeqiNP_003202.3. NM_003211.4.
UniGeneiHs.584809.

Genome annotation databases

EnsembliENST00000544861; ENSP00000445899; ENSG00000139372.
GeneIDi6996.
KEGGihsa:6996.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC078819 Genomic DNA. No translation available.
AK303631 mRNA. Translation: BAG64639.1 .
RefSeqi NP_003202.3. NM_003211.4.
UniGenei Hs.584809.

3D structure databases

ProteinModelPortali B4E127.
SMRi B4E127. Positions 1-189.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENST00000544861 ; ENSP00000445899 ; ENSG00000139372 .
GeneIDi 6996.
KEGGi hsa:6996.

Organism-specific databases

CTDi 6996.
HGNCi HGNC:11700. TDG.
PharmGKBi PA36419.
GenAtlasi Search...

Phylogenomic databases

GeneTreei ENSGT00390000000987.
HOVERGENi HBG003685.
KOi K03649.

Miscellaneous databases

ChiTaRSi TDG. human.
GenomeRNAii 6996.
NextBioi 27327.

Gene expression databases

ExpressionAtlasi B4E127. baseline and differential.

Family and domain databases

Gene3Di 3.40.470.10. 1 hit.
InterProi IPR015637. DNA_glycosylase_G/T-mismatch.
IPR003310. Thymine-DNA_glycosylase.
IPR005122. Uracil-DNA_glycosylase-like.
[Graphical view ]
PANTHERi PTHR12159. PTHR12159. 1 hit.
Pfami PF03167. UDG. 1 hit.
[Graphical view ]
SUPFAMi SSF52141. SSF52141. 1 hit.
TIGRFAMsi TIGR00584. mug. 1 hit.
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "The finished DNA sequence of human chromosome 12."
    Baylor College of Medicine Human Genome Sequencing Center Sequence Production Team
    Scherer S.E., Muzny D.M., Buhay C.J., Chen R., Cree A., Ding Y., Dugan-Rocha S., Gill R., Gunaratne P., Harris R.A., Hawes A.C., Hernandez J., Hodgson A.V., Hume J., Jackson A., Khan Z.M., Kovar-Smith C., Lewis L.R.
    , Lozado R.J., Metzker M.L., Milosavljevic A., Miner G.R., Montgomery K.T., Morgan M.B., Nazareth L.V., Scott G., Sodergren E., Song X.Z., Steffen D., Lovering R.C., Wheeler D.A., Worley K.C., Yuan Y., Zhang Z., Adams C.Q., Ansari-Lari M.A., Ayele M., Brown M.J., Chen G., Chen Z., Clerc-Blankenburg K.P., Davis C., Delgado O., Dinh H.H., Draper H., Gonzalez-Garay M.L., Havlak P., Jackson L.R., Jacob L.S., Kelly S.H., Li L., Li Z., Liu J., Liu W., Lu J., Maheshwari M., Nguyen B.V., Okwuonu G.O., Pasternak S., Perez L.M., Plopper F.J., Santibanez J., Shen H., Tabor P.E., Verduzco D., Waldron L., Wang Q., Williams G.A., Zhang J., Zhou J., Allen C.C., Amin A.G., Anyalebechi V., Bailey M., Barbaria J.A., Bimage K.E., Bryant N.P., Burch P.E., Burkett C.E., Burrell K.L., Calderon E., Cardenas V., Carter K., Casias K., Cavazos I., Cavazos S.R., Ceasar H., Chacko J., Chan S.N., Chavez D., Christopoulos C., Chu J., Cockrell R., Cox C.D., Dang M., Dathorne S.R., David R., Davis C.M., Davy-Carroll L., Deshazo D.R., Donlin J.E., D'Souza L., Eaves K.A., Egan A., Emery-Cohen A.J., Escotto M., Flagg N., Forbes L.D., Gabisi A.M., Garza M., Hamilton C., Henderson N., Hernandez O., Hines S., Hogues M.E., Huang M., Idlebird D.G., Johnson R., Jolivet A., Jones S., Kagan R., King L.M., Leal B., Lebow H., Lee S., LeVan J.M., Lewis L.C., London P., Lorensuhewa L.M., Loulseged H., Lovett D.A., Lucier A., Lucier R.L., Ma J., Madu R.C., Mapua P., Martindale A.D., Martinez E., Massey E., Mawhiney S., Meador M.G., Mendez S., Mercado C., Mercado I.C., Merritt C.E., Miner Z.L., Minja E., Mitchell T., Mohabbat F., Mohabbat K., Montgomery B., Moore N., Morris S., Munidasa M., Ngo R.N., Nguyen N.B., Nickerson E., Nwaokelemeh O.O., Nwokenkwo S., Obregon M., Oguh M., Oragunye N., Oviedo R.J., Parish B.J., Parker D.N., Parrish J., Parks K.L., Paul H.A., Payton B.A., Perez A., Perrin W., Pickens A., Primus E.L., Pu L.L., Puazo M., Quiles M.M., Quiroz J.B., Rabata D., Reeves K., Ruiz S.J., Shao H., Sisson I., Sonaike T., Sorelle R.P., Sutton A.E., Svatek A.F., Svetz L.A., Tamerisa K.S., Taylor T.R., Teague B., Thomas N., Thorn R.D., Trejos Z.Y., Trevino B.K., Ukegbu O.N., Urban J.B., Vasquez L.I., Vera V.A., Villasana D.M., Wang L., Ward-Moore S., Warren J.T., Wei X., White F., Williamson A.L., Wleczyk R., Wooden H.S., Wooden S.H., Yen J., Yoon L., Yoon V., Zorrilla S.E., Nelson D., Kucherlapati R., Weinstock G., Gibbs R.A., null.
    Nature 440:346-351(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  2. "NEDO human cDNA sequencing project focused on splicing variants."
    Wakamatsu A., Yamamoto J., Kimura K., Ishii S., Watanabe K., Sugiyama A., Murakawa K., Kaida T., Tsuchiya K., Fukuzumi Y., Kumagai A., Oishi Y., Yamamoto S., Ono Y., Komori Y., Yamazaki M., Kisu Y., Nishikawa T.
    , Sugano S., Nomura N., Isogai T.
    Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Tissue: ThymusImported.
  3. Ensembl
    Submitted (FEB-2012) to UniProtKB
    Cited for: IDENTIFICATION.

Entry informationi

Entry nameiB4E127_HUMAN
AccessioniPrimary (citable) accession number: B4E127
Entry historyi
Integrated into UniProtKB/TrEMBL: September 23, 2008
Last sequence update: September 23, 2008
Last modified: November 26, 2014
This is version 51 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3