Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein
Submitted name:

Transcription factor SOX-30

Gene

SOX30

Organism
Homo sapiens (Human)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Names & Taxonomyi

Protein namesi
Submitted name:
Transcription factor SOX-30Imported
Submitted name:
cDNA FLJ53881, highly similar to Transcription factor SOX-30Imported
Gene namesi
Name:SOX30Imported
OrganismiHomo sapiens (Human)Imported
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
Proteomesi
  • UP000005640 Componenti: Chromosome 5

Organism-specific databases

HGNCiHGNC:30635. SOX30.

PTM / Processingi

Proteomic databases

PeptideAtlasiB4DXW7.

Interactioni

Protein-protein interaction databases

STRINGi9606.ENSP00000265007.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini32 – 10069HMG box DNA-bindingInterPro annotationAdd
BLAST

Phylogenomic databases

eggNOGiENOG410KD21. Eukaryota.
ENOG4112BUX. LUCA.
GeneTreeiENSGT00760000119274.
HOGENOMiHOG000070158.
HOVERGENiHBG057980.
KOiK09271.

Family and domain databases

Gene3Di1.10.30.10. 1 hit.
InterProiIPR009071. HMG_box_dom.
[Graphical view]
PfamiPF00505. HMG_box. 1 hit.
[Graphical view]
SMARTiSM00398. HMG. 1 hit.
[Graphical view]
SUPFAMiSSF47095. SSF47095. 1 hit.
PROSITEiPS50118. HMG_BOX_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B4DXW7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MEKCCRGKEQ SLLCIQQGIP DTPFSKDRNG HVKRPMNAFM VWARIHRPAL
60 70 80 90 100
AKANPAANNA EISVQLGLEW NKLSEEQKKP YYDEAQKIKE KHREEFPGWV
110 120 130 140 150
YQPRPGKRKR FPLSVSNVFS GTTQNIISTN PTTVYPYRSP TYSVVIPSLQ
160 170 180 190 200
NPITHPVGET SPAIQLPTPA VQSPSPVTLF QPSVSSAAQV AVQDPSLPVY
210 220 230 240 250
PALPPQRFTG PSQTDTHQLH SEATHTVKQP TPVSLESANR ISSSASTAHA
260 270 280 290 300
RFATSTIQPP REYSSVSPCP RSAPIPQASP IPHPHVYQPP PLGHPATLFG
310 320 330 340 350
TPPRFSFHHP YFLPGPHYFP SSTCPYSRPP FGYGNFPSSM PECLSYYEDR
360 370 380 390 400
YPKHEGIFST LNRDYSFRDY SSECTHSENS RSCENMNGTS YYNSHSHSGE
410 420 430 440
ENLNPVPQLD IGTLENVFTA PTSTPSSIQQ VNVTDSDEEE EEKVLRDL
Length:448
Mass (Da):49,882
Last modified:September 23, 2008 - v1
Checksum:i29894EEBBD98FCEF
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC008694 Genomic DNA. No translation available.
AK302162 mRNA. Translation: BAG63529.1.
RefSeqiNP_001295094.1. NM_001308165.1.
XP_005265860.1. XM_005265803.3.
XP_011532722.1. XM_011534420.1.
UniGeneiHs.529462.
Hs.744348.

Genome annotation databases

EnsembliENST00000519442; ENSP00000427984; ENSG00000039600.
GeneIDi11063.
KEGGihsa:11063.
UCSCiuc011dds.2. human.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC008694 Genomic DNA. No translation available.
AK302162 mRNA. Translation: BAG63529.1.
RefSeqiNP_001295094.1. NM_001308165.1.
XP_005265860.1. XM_005265803.3.
XP_011532722.1. XM_011534420.1.
UniGeneiHs.529462.
Hs.744348.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi9606.ENSP00000265007.

Proteomic databases

PeptideAtlasiB4DXW7.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENST00000519442; ENSP00000427984; ENSG00000039600.
GeneIDi11063.
KEGGihsa:11063.
UCSCiuc011dds.2. human.

Organism-specific databases

CTDi11063.
HGNCiHGNC:30635. SOX30.
GenAtlasiSearch...

Phylogenomic databases

eggNOGiENOG410KD21. Eukaryota.
ENOG4112BUX. LUCA.
GeneTreeiENSGT00760000119274.
HOGENOMiHOG000070158.
HOVERGENiHBG057980.
KOiK09271.

Miscellaneous databases

ChiTaRSiSOX30. human.
GenomeRNAii11063.

Family and domain databases

Gene3Di1.10.30.10. 1 hit.
InterProiIPR009071. HMG_box_dom.
[Graphical view]
PfamiPF00505. HMG_box. 1 hit.
[Graphical view]
SMARTiSM00398. HMG. 1 hit.
[Graphical view]
SUPFAMiSSF47095. SSF47095. 1 hit.
PROSITEiPS50118. HMG_BOX_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "The DNA sequence and comparative analysis of human chromosome 5."
    Schmutz J., Martin J., Terry A., Couronne O., Grimwood J., Lowry S., Gordon L.A., Scott D., Xie G., Huang W., Hellsten U., Tran-Gyamfi M., She X., Prabhakar S., Aerts A., Altherr M., Bajorek E., Black S.
    , Branscomb E., Caoile C., Challacombe J.F., Chan Y.M., Denys M., Detter J.C., Escobar J., Flowers D., Fotopulos D., Glavina T., Gomez M., Gonzales E., Goodstein D., Grigoriev I., Groza M., Hammon N., Hawkins T., Haydu L., Israni S., Jett J., Kadner K., Kimball H., Kobayashi A., Lopez F., Lou Y., Martinez D., Medina C., Morgan J., Nandkeshwar R., Noonan J.P., Pitluck S., Pollard M., Predki P., Priest J., Ramirez L., Retterer J., Rodriguez A., Rogers S., Salamov A., Salazar A., Thayer N., Tice H., Tsai M., Ustaszewska A., Vo N., Wheeler J., Wu K., Yang J., Dickson M., Cheng J.-F., Eichler E.E., Olsen A., Pennacchio L.A., Rokhsar D.S., Richardson P., Lucas S.M., Myers R.M., Rubin E.M.
    Nature 431:268-274(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  2. "NEDO human cDNA sequencing project focused on splicing variants."
    Wakamatsu A., Yamamoto J., Kimura K., Ishii S., Watanabe K., Sugiyama A., Murakawa K., Kaida T., Tsuchiya K., Fukuzumi Y., Kumagai A., Oishi Y., Yamamoto S., Ono Y., Komori Y., Yamazaki M., Kisu Y., Nishikawa T.
    , Sugano S., Nomura N., Isogai T.
    Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Tissue: TestisImported.
  3. Ensembl
    Submitted (FEB-2012) to UniProtKB
    Cited for: IDENTIFICATION.

Entry informationi

Entry nameiB4DXW7_HUMAN
AccessioniPrimary (citable) accession number: B4DXW7
Entry historyi
Integrated into UniProtKB/TrEMBL: September 23, 2008
Last sequence update: September 23, 2008
Last modified: July 6, 2016
This is version 61 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.