Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Basket 0
(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

B4DW27

- B4DW27_HUMAN

UniProt

B4DW27 - B4DW27_HUMAN

Protein
Submitted name:

cDNA FLJ50887, highly similar to PR domain zinc finger protein 1

Gene
N/A
Organism
Homo sapiens (Human)
Status
Unreviewed - Annotation score: 1 out of 5- Experimental evidence at transcript leveli
    • BLAST
    • Align
    • Format
    • Add to basket
    • History
      Entry version 32 (01 Oct 2014)
      Sequence version 1 (23 Sep 2008)
      Previous versions | rss
    • Help video
    • Feedback
    • Comment

    Functioni

    GO - Molecular functioni

    1. metal ion binding Source: InterPro
    2. nucleic acid binding Source: InterPro

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    cDNA FLJ50887, highly similar to PR domain zinc finger protein 1Imported
    OrganismiHomo sapiens (Human)Imported
    Taxonomic identifieri9606 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo

    Expressioni

    Gene expression databases

    ArrayExpressiB4DW27.
    BgeeiB4DW27.

    Family & Domainsi

    Sequence similaritiesi

    Contains 1 SET domain.UniRule annotation
    Contains SET domain.SAAS annotation

    Phylogenomic databases

    HOVERGENiHBG053670.

    Family and domain databases

    Gene3Di3.30.160.60. 5 hits.
    InterProiIPR001214. SET_dom.
    IPR007087. Znf_C2H2.
    IPR015880. Znf_C2H2-like.
    IPR013087. Znf_C2H2/integrase_DNA-bd.
    IPR016608. Znf_PRDM1.
    [Graphical view]
    PfamiPF00856. SET. 1 hit.
    [Graphical view]
    PIRSFiPIRSF013212. PRDM1. 1 hit.
    SMARTiSM00317. SET. 1 hit.
    SM00355. ZnF_C2H2. 5 hits.
    [Graphical view]
    PROSITEiPS50280. SET. 1 hit.
    PS00028. ZINC_FINGER_C2H2_1. 4 hits.
    PS50157. ZINC_FINGER_C2H2_2. 4 hits.
    [Graphical view]

    Sequencei

    Sequence statusi: Fragment.

    B4DW27-1 [UniParc]FASTAAdd to Basket

    « Hide

    MEKIYSRGEL HHFIDGFNEE KSNWMRYVNP AHSPREQNLA ACQNGMNIYF    50
    YTIKPIPANQ ELLVWYCRDF AERLHYPYPG ELTMMNLTQT QSSLKQPSTE 100
    KNELCPKNVP KREYSVKEIL KLDSNPSKGK DLYRSNISPL TSEKDLDDFR 150
    RRGSPEMPFY PRVVYPIRAP LPEDFLKASL AYGIERPTYI TRSPIPSSTT 200
    PSPSARSSPD QSLKSSSPHS SPGNTVSPVG PGSQEHRDSY AYLNASYGTE 250
    GLGSYPGYAP LPHLPPAFIP SYNAHYPKFL LPPYGMNCNG LSAVSSMNGI 300
    NNFGLFPRLC PVYSNLLGGG SLPHPMLNPT SLPSSLPSDG ARRLLQPEHP 350
    REVLVPAPHS AFSFTGAAAS MKDKACSPTS GSPTAGTAAT AEHVVQPKAT 400
    SAAMAAPSSD EAMNLIKNKR NMTGYKTLPY PLKKQNGKIK YECNVCAKTF 450
    GQLSNLKVHL RVHSGERPFK CQTCNKGFTQ LAHLQKHYLV HTGEKPHECQ 500
    VCHKRFSSTS NLKTHLRLHS GEKPYQCKVC PAKFTQFVHL KLHKRLHTRE 550
    RPHKCSQCHK NYIHLCSLKV HLKGNCAAAP APGLPLEDLT RINEEIEKFD 600
    ISDNADRLED VEDDISVISV VEKEILAVV 629
    Length:629
    Mass (Da):70,046
    Last modified:September 23, 2008 - v1
    Checksum:i17E63BE19CC57AE7
    GO

    Experimental Info

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Non-terminal residuei629 – 6291Imported

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AK301341 mRNA. Translation: BAG62889.1.
    RefSeqiNP_878911.1. NM_182907.2.
    UniGeneiHs.436023.

    Genome annotation databases

    GeneIDi639.
    KEGGihsa:639.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AK301341 mRNA. Translation: BAG62889.1 .
    RefSeqi NP_878911.1. NM_182907.2.
    UniGenei Hs.436023.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    GeneIDi 639.
    KEGGi hsa:639.

    Organism-specific databases

    CTDi 639.

    Phylogenomic databases

    HOVERGENi HBG053670.

    Miscellaneous databases

    GenomeRNAii 639.
    NextBioi 2590.

    Gene expression databases

    ArrayExpressi B4DW27.
    Bgeei B4DW27.

    Family and domain databases

    Gene3Di 3.30.160.60. 5 hits.
    InterProi IPR001214. SET_dom.
    IPR007087. Znf_C2H2.
    IPR015880. Znf_C2H2-like.
    IPR013087. Znf_C2H2/integrase_DNA-bd.
    IPR016608. Znf_PRDM1.
    [Graphical view ]
    Pfami PF00856. SET. 1 hit.
    [Graphical view ]
    PIRSFi PIRSF013212. PRDM1. 1 hit.
    SMARTi SM00317. SET. 1 hit.
    SM00355. ZnF_C2H2. 5 hits.
    [Graphical view ]
    PROSITEi PS50280. SET. 1 hit.
    PS00028. ZINC_FINGER_C2H2_1. 4 hits.
    PS50157. ZINC_FINGER_C2H2_2. 4 hits.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "NEDO human cDNA sequencing project focused on splicing variants."
      Wakamatsu A., Yamamoto J., Kimura K., Ishii S., Watanabe K., Sugiyama A., Murakawa K., Kaida T., Tsuchiya K., Fukuzumi Y., Kumagai A., Oishi Y., Yamamoto S., Ono Y., Komori Y., Yamazaki M., Kisu Y., Nishikawa T.
      , Sugano S., Nomura N., Isogai T.
      Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE.
      Tissue: Synovial membrane tissueImported.

    Entry informationi

    Entry nameiB4DW27_HUMAN
    AccessioniPrimary (citable) accession number: B4DW27
    Entry historyi
    Integrated into UniProtKB/TrEMBL: September 23, 2008
    Last sequence update: September 23, 2008
    Last modified: October 1, 2014
    This is version 32 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)
    DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.