B4DVQ8 (B4DVQ8_HUMAN) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names	Submitted name: cDNA FLJ60911, moderately similar to HLA class II histocompatibility antigen, DP(W4) beta chain EMBL BAG62770.1
Organism	Homo sapiens (Human) EMBL BAG62770.1
Taxonomic identifier	9606 [NCBI]
Taxonomic lineage	cellular organisms › Eukaryota › Opisthokonta › Metazoa › Eumetazoa › Bilateria › Deuterostomia › Chordata › Craniata › Vertebrata › Gnathostomata › Teleostomi › Euteleostomi › Sarcopterygii › Tetrapoda › Amniota › Mammalia › Theria › Eutheria › Euarchontoglires › Primates › Haplorrhini › Simiiformes › Catarrhini › Hominoidea › Hominidae › Homininae › Homo

Protein attributes

Sequence length	134 AA.
Sequence status	Complete.
Protein existence	Evidence at transcript level

Ontologies

Keywords
Biological process	Immunity
Cellular component	MHC II RuleBase RU000321 Membrane
Domain	Transmembrane RuleBase RU000321
Gene Ontology (GO)
Biological_process	antigen processing and presentation of peptide or polysaccharide antigen via MHC class II Inferred from electronic annotation. Source: UniProtKB-KW immune response Inferred from electronic annotation. Source: InterPro
Cellular_component	MHC class II protein complex Inferred from electronic annotation. Source: UniProtKB-KW integral to membrane Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	B4DVQ8 [UniParc]. Last modified September 23, 2008. Version 1. Checksum: 44D136A8C54C0DA7	FASTA	134	15,677
	10 20 30 40 50 60 MMILQVSGGP WTVALTALLM VLLISVVQSR ATPENSVYQE RQECYAFNGT QRVVDGLIYN 70 80 90 100 110 120 REEYVHFDSA VGEFLAVMEL GRPIGEYFNS QKDFMERKRA EVDKVCRHKY ELMEPLIRQR 130 RGHKCQQLHR YFSV

References

[1]

"NEDO human cDNA sequencing project focused on splicing variants." Wakamatsu A., Yamamoto J., Kimura K., Ishii S., Watanabe K., Sugiyama A., Murakawa K., Kaida T., Tsuchiya K., Fukuzumi Y., Kumagai A., Oishi Y., Yamamoto S., Ono Y., Komori Y., Yamazaki M., Kisu Y., Nishikawa T. , Sugano S., Nomura N., Isogai T. Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE. Tissue: Spleen EMBL BAG62770.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AK301188 mRNA. Translation: BAG62770.1.
UniGene	Hs.665450.
3D structure databases
ProteinModelPortal	B4DVQ8.
SMR	B4DVQ8. Positions 31-121.
ModBase	Search...
Protein-protein interaction databases
STRING	9606.ENSP00000399924. B4DVQ8.
Proteomic databases
PRIDE	B4DVQ8.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
UCSC	uc003ocv.1. human.
Phylogenomic databases
eggNOG	NOG140354.
HOGENOM	HOG000070130.
HOVERGEN	HBG012730.
Family and domain databases
Gene3D	3.10.320.10. 1 hit.
InterPro	IPR011162. MHC_I/II-like_Ag-recog. IPR014745. MHC_II_a/b_N. IPR000353. MHC_II_b_N. [Graphical view]
Pfam	PF00969. MHC_II_beta. 1 hit. [Graphical view]
ProDom	PD000328. MHC_II_b_N. 1 hit. [Graphical view] [Entries sharing at least one domain]
SMART	SM00921. MHC_II_beta. 1 hit. [Graphical view]
SUPFAM	SSF54452. MHC_I/II-like_Ag-recog. 1 hit.
ProtoNet	Search...
Other
NextBio	35475526.

Entry information

Entry name

B4DVQ8_HUMAN

Accession

Primary (citable) accession number: B4DVQ8

Entry history

Integrated into UniProtKB/TrEMBL:	September 23, 2008
Last sequence update:	September 23, 2008
Last modified:	April 3, 2013
This is version 36 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)

Disclaimer

Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.