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B4DVQ8

- B4DVQ8_HUMAN

UniProt

B4DVQ8 - B4DVQ8_HUMAN

Protein
Submitted name:

cDNA FLJ60911, moderately similar to HLA class II histocompatibility antigen, DP(W4) beta chain

Gene
N/A
Organism
Homo sapiens (Human)
Status
Unreviewed - Annotation score: 1 out of 5- Experimental evidence at transcript leveli
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    • History
      Entry version 41 (01 Oct 2014)
      Sequence version 1 (23 Sep 2008)
      Previous versions | rss
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    Functioni

    GO - Biological processi

    1. antigen processing and presentation of peptide or polysaccharide antigen via MHC class II Source: UniProtKB-KW
    2. immune response Source: InterPro

    Keywords - Biological processi

    Immunity

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    cDNA FLJ60911, moderately similar to HLA class II histocompatibility antigen, DP(W4) beta chainImported
    OrganismiHomo sapiens (Human)Imported
    Taxonomic identifieri9606 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo

    Subcellular locationi

    GO - Cellular componenti

    1. integral component of membrane Source: UniProtKB-KW
    2. MHC class II protein complex Source: UniProtKB-KW

    Keywords - Cellular componenti

    Membrane, MHC IIUniRule annotation

    PTM / Processingi

    Proteomic databases

    PRIDEiB4DVQ8.

    Interactioni

    Protein-protein interaction databases

    STRINGi9606.ENSP00000399924.

    Structurei

    3D structure databases

    ProteinModelPortaliB4DVQ8.
    SMRiB4DVQ8. Positions 31-121.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Keywords - Domaini

    TransmembraneUniRule annotation

    Phylogenomic databases

    eggNOGiNOG140354.
    HOGENOMiHOG000070130.
    HOVERGENiHBG012730.
    PhylomeDBiB4DVQ8.

    Family and domain databases

    Gene3Di3.10.320.10. 1 hit.
    InterProiIPR011162. MHC_I/II-like_Ag-recog.
    IPR014745. MHC_II_a/b_N.
    IPR000353. MHC_II_b_N.
    [Graphical view]
    PfamiPF00969. MHC_II_beta. 1 hit.
    [Graphical view]
    ProDomiPD000328. MHC_II_b_N. 1 hit.
    [Graphical view] [Entries sharing at least one domain]
    SMARTiSM00921. MHC_II_beta. 1 hit.
    [Graphical view]
    SUPFAMiSSF54452. SSF54452. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    B4DVQ8-1 [UniParc]FASTAAdd to Basket

    « Hide

    MMILQVSGGP WTVALTALLM VLLISVVQSR ATPENSVYQE RQECYAFNGT    50
    QRVVDGLIYN REEYVHFDSA VGEFLAVMEL GRPIGEYFNS QKDFMERKRA 100
    EVDKVCRHKY ELMEPLIRQR RGHKCQQLHR YFSV 134
    Length:134
    Mass (Da):15,677
    Last modified:September 23, 2008 - v1
    Checksum:i44D136A8C54C0DA7
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AK301188 mRNA. Translation: BAG62770.1.
    UniGeneiHs.665450.

    Genome annotation databases

    UCSCiuc003ocv.1. human.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AK301188 mRNA. Translation: BAG62770.1 .
    UniGenei Hs.665450.

    3D structure databases

    ProteinModelPortali B4DVQ8.
    SMRi B4DVQ8. Positions 31-121.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 9606.ENSP00000399924.

    Proteomic databases

    PRIDEi B4DVQ8.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    UCSCi uc003ocv.1. human.

    Phylogenomic databases

    eggNOGi NOG140354.
    HOGENOMi HOG000070130.
    HOVERGENi HBG012730.
    PhylomeDBi B4DVQ8.

    Miscellaneous databases

    NextBioi 35475526.

    Family and domain databases

    Gene3Di 3.10.320.10. 1 hit.
    InterProi IPR011162. MHC_I/II-like_Ag-recog.
    IPR014745. MHC_II_a/b_N.
    IPR000353. MHC_II_b_N.
    [Graphical view ]
    Pfami PF00969. MHC_II_beta. 1 hit.
    [Graphical view ]
    ProDomi PD000328. MHC_II_b_N. 1 hit.
    [Graphical view ] [Entries sharing at least one domain ]
    SMARTi SM00921. MHC_II_beta. 1 hit.
    [Graphical view ]
    SUPFAMi SSF54452. SSF54452. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "NEDO human cDNA sequencing project focused on splicing variants."
      Wakamatsu A., Yamamoto J., Kimura K., Ishii S., Watanabe K., Sugiyama A., Murakawa K., Kaida T., Tsuchiya K., Fukuzumi Y., Kumagai A., Oishi Y., Yamamoto S., Ono Y., Komori Y., Yamazaki M., Kisu Y., Nishikawa T.
      , Sugano S., Nomura N., Isogai T.
      Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE.
      Tissue: SpleenImported.

    Entry informationi

    Entry nameiB4DVQ8_HUMAN
    AccessioniPrimary (citable) accession number: B4DVQ8
    Entry historyi
    Integrated into UniProtKB/TrEMBL: September 23, 2008
    Last sequence update: September 23, 2008
    Last modified: October 1, 2014
    This is version 41 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)
    DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.