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Protein
Submitted name:

cDNA FLJ60911, moderately similar to HLA class II histocompatibility antigen, DP(W4) beta chain

Gene
N/A
Organism
Homo sapiens (Human)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Biological processi

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
cDNA FLJ60911, moderately similar to HLA class II histocompatibility antigen, DP(W4) beta chainImported
OrganismiHomo sapiens (Human)Imported
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 29Sequence analysisAdd BLAST29
ChainiPRO_500280102530 – 134Sequence analysisAdd BLAST105

Proteomic databases

PeptideAtlasiB4DVQ8.
PRIDEiB4DVQ8.

PTM databases

iPTMnetiB4DVQ8.
PhosphoSitePlusiB4DVQ8.

Structurei

3D structure databases

ProteinModelPortaliB4DVQ8.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini42 – 114MHC_II_betaInterPro annotationAdd BLAST73

Keywords - Domaini

SignalSequence analysis

Phylogenomic databases

HOGENOMiHOG000070130.
HOVERGENiHBG012730.
PhylomeDBiB4DVQ8.

Family and domain databases

Gene3Di3.10.320.10. 1 hit.
InterProiIPR011162. MHC_I/II-like_Ag-recog.
IPR014745. MHC_II_a/b_N.
IPR000353. MHC_II_b_N.
[Graphical view]
PfamiPF00969. MHC_II_beta. 1 hit.
[Graphical view]
ProDomiPD000328. MHC_II_b_N. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SMARTiSM00921. MHC_II_beta. 1 hit.
[Graphical view]
SUPFAMiSSF54452. SSF54452. 1 hit.

Sequencei

Sequence statusi: Complete.

B4DVQ8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MMILQVSGGP WTVALTALLM VLLISVVQSR ATPENSVYQE RQECYAFNGT
60 70 80 90 100
QRVVDGLIYN REEYVHFDSA VGEFLAVMEL GRPIGEYFNS QKDFMERKRA
110 120 130
EVDKVCRHKY ELMEPLIRQR RGHKCQQLHR YFSV
Length:134
Mass (Da):15,677
Last modified:September 23, 2008 - v1
Checksum:i44D136A8C54C0DA7
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK301188 mRNA. Translation: BAG62770.1.
UniGeneiHs.665450.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK301188 mRNA. Translation: BAG62770.1.
UniGeneiHs.665450.

3D structure databases

ProteinModelPortaliB4DVQ8.
ModBaseiSearch...
MobiDBiSearch...

PTM databases

iPTMnetiB4DVQ8.
PhosphoSitePlusiB4DVQ8.

Proteomic databases

PeptideAtlasiB4DVQ8.
PRIDEiB4DVQ8.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Phylogenomic databases

HOGENOMiHOG000070130.
HOVERGENiHBG012730.
PhylomeDBiB4DVQ8.

Family and domain databases

Gene3Di3.10.320.10. 1 hit.
InterProiIPR011162. MHC_I/II-like_Ag-recog.
IPR014745. MHC_II_a/b_N.
IPR000353. MHC_II_b_N.
[Graphical view]
PfamiPF00969. MHC_II_beta. 1 hit.
[Graphical view]
ProDomiPD000328. MHC_II_b_N. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SMARTiSM00921. MHC_II_beta. 1 hit.
[Graphical view]
SUPFAMiSSF54452. SSF54452. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiB4DVQ8_HUMAN
AccessioniPrimary (citable) accession number: B4DVQ8
Entry historyi
Integrated into UniProtKB/TrEMBL: September 23, 2008
Last sequence update: September 23, 2008
Last modified: November 2, 2016
This is version 53 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.