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Protein
Submitted name:

cDNA FLJ54552, highly similar to Heterogeneous nuclear ribonucleoprotein K

Gene
N/A
Organism
Homo sapiens (Human)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

RibonucleoproteinImported

Keywords - Ligandi

Viral nucleoproteinImported

Names & Taxonomyi

Protein namesi
Submitted name:
cDNA FLJ54552, highly similar to Heterogeneous nuclear ribonucleoprotein KImported
OrganismiHomo sapiens (Human)Imported
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Virion

PTM / Processingi

Proteomic databases

PRIDEiB4DUQ1.

Expressioni

Gene expression databases

BgeeiB4DUQ1.

Structurei

3D structure databases

ProteinModelPortaliB4DUQ1.
SMRiB4DUQ1. Positions 41-191, 361-439.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini42 – 10463KHInterPro annotationAdd
BLAST
Domaini120 – 18566KHInterPro annotationAdd
BLAST
Domaini363 – 42765KHInterPro annotationAdd
BLAST

Sequence similaritiesi

Contains 3 KH domains.UniRule annotation

Phylogenomic databases

HOGENOMiHOG000019764.
HOVERGENiHBG051916.

Family and domain databases

Gene3Di3.30.1370.10. 3 hits.
InterProiIPR033090. hnRNP_K.
IPR004087. KH_dom.
IPR004088. KH_dom_type_1.
IPR012987. ROK_N.
[Graphical view]
PANTHERiPTHR10288:SF167. PTHR10288:SF167. 1 hit.
PfamiPF00013. KH_1. 3 hits.
PF08067. ROKNT. 1 hit.
[Graphical view]
SMARTiSM00322. KH. 3 hits.
[Graphical view]
SUPFAMiSSF54791. SSF54791. 3 hits.
PROSITEiPS50084. KH_TYPE_1. 3 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B4DUQ1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
METEQPEETF PNTETNGEFG KRPAEDMEEE QAFKRSRNTD EMVELRILLQ
60 70 80 90 100
SKNAGAVIGK GGKNIKALRT DYNASVSVPD SSGPERILSI SADIETIGEI
110 120 130 140 150
LKKIIPTLEE YQHYKGSDFD CELRLLIHQS LAGGIIGVKG AKIKELRENT
160 170 180 190 200
QTTIKLFQEC CPHSTDRVVL IGGKPDRVVE CIKIILDLIS ESPIKGRAQP
210 220 230 240 250
YDPNFYDETY DYGGFTMMFD DRRGRPVGFP MRGRGGFDRM PPGRGGRPMP
260 270 280 290 300
PSRRDYDDMS PRRGPPPPPP GRGGRGGSRA RNLPLPPPPP PRGGDLMAYD
310 320 330 340 350
RRGRPGDRYD GMVGFSADET WDSAIDTWSP SEWQMAYEPQ GGSGYDYSYA
360 370 380 390 400
GGRGSYGDLG GPIITTQVTI PKDLAGSIIG KGGQRIKQIR HESGASIKID
410 420 430
EPLEGSEDRI ITITGTQDQI QNAQYLLQNS VKQYSGKFF
Length:439
Mass (Da):48,510
Last modified:September 23, 2008 - v1
Checksum:i7BCA66B4E39776DB
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK300744 mRNA. Translation: BAG62413.1.
RefSeqiNP_001305115.1. NM_001318186.1.
XP_011516918.1. XM_011518616.1.
UniGeneiHs.522257.

Genome annotation databases

GeneIDi3190.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK300744 mRNA. Translation: BAG62413.1.
RefSeqiNP_001305115.1. NM_001318186.1.
XP_011516918.1. XM_011518616.1.
UniGeneiHs.522257.

3D structure databases

ProteinModelPortaliB4DUQ1.
SMRiB4DUQ1. Positions 41-191, 361-439.
ModBaseiSearch...
MobiDBiSearch...

Proteomic databases

PRIDEiB4DUQ1.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi3190.

Organism-specific databases

CTDi3190.

Phylogenomic databases

HOGENOMiHOG000019764.
HOVERGENiHBG051916.

Miscellaneous databases

GenomeRNAii3190.
NextBioi35475245.

Gene expression databases

BgeeiB4DUQ1.

Family and domain databases

Gene3Di3.30.1370.10. 3 hits.
InterProiIPR033090. hnRNP_K.
IPR004087. KH_dom.
IPR004088. KH_dom_type_1.
IPR012987. ROK_N.
[Graphical view]
PANTHERiPTHR10288:SF167. PTHR10288:SF167. 1 hit.
PfamiPF00013. KH_1. 3 hits.
PF08067. ROKNT. 1 hit.
[Graphical view]
SMARTiSM00322. KH. 3 hits.
[Graphical view]
SUPFAMiSSF54791. SSF54791. 3 hits.
PROSITEiPS50084. KH_TYPE_1. 3 hits.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "NEDO human cDNA sequencing project focused on splicing variants."
    Wakamatsu A., Yamamoto J., Kimura K., Ishii S., Watanabe K., Sugiyama A., Murakawa K., Kaida T., Tsuchiya K., Fukuzumi Y., Kumagai A., Oishi Y., Yamamoto S., Ono Y., Komori Y., Yamazaki M., Kisu Y., Nishikawa T.
    , Sugano S., Nomura N., Isogai T.
    Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.

Entry informationi

Entry nameiB4DUQ1_HUMAN
AccessioniPrimary (citable) accession number: B4DUQ1
Entry historyi
Integrated into UniProtKB/TrEMBL: September 23, 2008
Last sequence update: September 23, 2008
Last modified: May 11, 2016
This is version 53 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.