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B4DT61

- B4DT61_HUMAN

UniProt

B4DT61 - B4DT61_HUMAN

Protein

Syndecan

Gene
N/A
Organism
Homo sapiens (Human)
Status
Unreviewed - Annotation score: 2 out of 5- Experimental evidence at transcript leveli
  1. Functioni

    Cell surface proteoglycan.UniRule annotation

    GO - Biological processi

    1. dendrite morphogenesis Source: Ensembl
    2. regulation of dendrite morphogenesis Source: Ensembl
    3. response to caffeine Source: Ensembl
    4. response to hypoxia Source: Ensembl
    5. wound healing Source: Ensembl

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    SyndecanUniRule annotation
    OrganismiHomo sapiens (Human)Imported
    Taxonomic identifieri9606 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo

    Subcellular locationi

    Membrane UniRule annotation; Single-pass type I membrane protein UniRule annotation

    GO - Cellular componenti

    1. integral component of membrane Source: UniProtKB-KW
    2. neuronal cell body Source: Ensembl

    Keywords - Cellular componenti

    Membrane

    PTM / Processingi

    Keywords - PTMi

    Glycoprotein, Heparan sulfateUniRule annotation, Proteoglycan

    Expressioni

    Gene expression databases

    ArrayExpressiB4DT61.
    BgeeiB4DT61.

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the syndecan proteoglycan family.UniRule annotation

    Keywords - Domaini

    Transmembrane, Transmembrane helixSAAS annotation

    Phylogenomic databases

    HOGENOMiHOG000263414.
    HOVERGENiHBG004501.

    Family and domain databases

    InterProiIPR003585. Neurexin-like.
    IPR001050. Syndecan.
    IPR027789. Syndecan/Neurexin_dom.
    [Graphical view]
    PANTHERiPTHR10915. PTHR10915. 1 hit.
    PfamiPF01034. Syndecan. 1 hit.
    [Graphical view]
    SMARTiSM00294. 4.1m. 1 hit.
    [Graphical view]
    PROSITEiPS00964. SYNDECAN. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    B4DT61-1 [UniParc]FASTAAdd to Basket

    « Hide

    MDPAEEDTNV YTEKHSDSLF KRTEVLAAVI AGGVIGFLFA IFLILLLVYR   50
    MRKKDEGSYD LGERKPSSAA YQKAPTKEFY A 81
    Length:81
    Mass (Da):9,122
    Last modified:September 23, 2008 - v1
    Checksum:i48C25C2E2DD3A5FA
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AK300067 mRNA. Translation: BAG61873.1.
    UniGeneiHs.1501.
    Hs.598247.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AK300067 mRNA. Translation: BAG61873.1 .
    UniGenei Hs.1501.
    Hs.598247.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Phylogenomic databases

    HOGENOMi HOG000263414.
    HOVERGENi HBG004501.

    Miscellaneous databases

    NextBioi 35474845.

    Gene expression databases

    ArrayExpressi B4DT61.
    Bgeei B4DT61.

    Family and domain databases

    InterProi IPR003585. Neurexin-like.
    IPR001050. Syndecan.
    IPR027789. Syndecan/Neurexin_dom.
    [Graphical view ]
    PANTHERi PTHR10915. PTHR10915. 1 hit.
    Pfami PF01034. Syndecan. 1 hit.
    [Graphical view ]
    SMARTi SM00294. 4.1m. 1 hit.
    [Graphical view ]
    PROSITEi PS00964. SYNDECAN. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "NEDO human cDNA sequencing project focused on splicing variants."
      Wakamatsu A., Yamamoto J., Kimura K., Ishii S., Watanabe K., Sugiyama A., Murakawa K., Kaida T., Tsuchiya K., Fukuzumi Y., Kumagai A., Oishi Y., Yamamoto S., Ono Y., Komori Y., Yamazaki M., Kisu Y., Nishikawa T.
      , Sugano S., Nomura N., Isogai T.
      Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE.
      Tissue: PericardiumImported.

    Entry informationi

    Entry nameiB4DT61_HUMAN
    AccessioniPrimary (citable) accession number: B4DT61
    Entry historyi
    Integrated into UniProtKB/TrEMBL: September 23, 2008
    Last sequence update: September 23, 2008
    Last modified: October 1, 2014
    This is version 31 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)
    DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.