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Protein

Syndecan

Gene
N/A
Organism
Homo sapiens (Human)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

Cell surface proteoglycan.UniRule annotation

Names & Taxonomyi

Protein namesi
Recommended name:
SyndecanUniRule annotation
OrganismiHomo sapiens (Human)Imported
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei25 – 49HelicalSequence analysisAdd BLAST25

Keywords - Cellular componenti

Membrane

PTM / Processingi

Keywords - PTMi

Glycoprotein, Heparan sulfateUniRule annotation, Proteoglycan

Proteomic databases

PaxDbiB4DT61.
PeptideAtlasiB4DT61.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini48 – 664.1mInterPro annotationAdd BLAST19

Sequence similaritiesi

Belongs to the syndecan proteoglycan family.UniRule annotation

Keywords - Domaini

Transmembrane, Transmembrane helixSequence analysisSAAS annotation

Phylogenomic databases

eggNOGiENOG410IW5I. Eukaryota.
ENOG4111QSA. LUCA.
HOGENOMiHOG000263414.
HOVERGENiHBG004501.

Family and domain databases

InterProiView protein in InterPro
IPR003585. Neurexin-like.
IPR001050. Syndecan.
IPR031201. Syndecan-2.
IPR027789. Syndecan/Neurexin_dom.
IPR030479. Syndecan_CS.
PANTHERiPTHR10915. PTHR10915. 1 hit.
PTHR10915:SF11. PTHR10915:SF11. 1 hit.
PfamiView protein in Pfam
PF01034. Syndecan. 1 hit.
SMARTiView protein in SMART
SM00294. 4.1m. 1 hit.
PROSITEiView protein in PROSITE
PS00964. SYNDECAN. 1 hit.

Sequencei

Sequence statusi: Complete.

B4DT61-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MDPAEEDTNV YTEKHSDSLF KRTEVLAAVI AGGVIGFLFA IFLILLLVYR
60 70 80
MRKKDEGSYD LGERKPSSAA YQKAPTKEFY A
Length:81
Mass (Da):9,122
Last modified:September 23, 2008 - v1
Checksum:i48C25C2E2DD3A5FA
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK300067 mRNA. Translation: BAG61873.1.
UniGeneiHs.1501.
Hs.598247.

Similar proteinsi

Entry informationi

Entry nameiB4DT61_HUMAN
AccessioniPrimary (citable) accession number: B4DT61
Entry historyiIntegrated into UniProtKB/TrEMBL: September 23, 2008
Last sequence update: September 23, 2008
Last modified: August 30, 2017
This is version 48 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.