B4DT61 (B4DT61_HUMAN) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names	Recommended name: Syndecan RuleBase RU000649
Organism	Homo sapiens (Human) EMBL BAG61873.1
Taxonomic identifier	9606 [NCBI]
Taxonomic lineage	cellular organisms › Eukaryota › Opisthokonta › Metazoa › Eumetazoa › Bilateria › Deuterostomia › Chordata › Craniata › Vertebrata › Gnathostomata › Teleostomi › Euteleostomi › Sarcopterygii › Tetrapoda › Amniota › Mammalia › Theria › Eutheria › Euarchontoglires › Primates › Haplorrhini › Simiiformes › Catarrhini › Hominoidea › Hominidae › Homininae › Homo

Protein attributes

Sequence length	81 AA.
Sequence status	Complete.
Protein existence	Evidence at transcript level

General annotation (Comments)

Function	Cell surface proteoglycan By similarity. RuleBase RU000649
Subcellular location	Membrane; Single-pass type I membrane protein By similarity RuleBase RU000649.
Sequence similarities	Belongs to the syndecan proteoglycan family. RuleBase RU000649

Ontologies

Keywords
Cellular component	Membrane
Domain	Transmembrane RuleBase RU000649
PTM	Glycoprotein Heparan sulfate RuleBase RU000649 Proteoglycan
Gene Ontology (GO)
Biological_process	dendrite morphogenesis Inferred from electronic annotation. Source: Compara response to caffeine Inferred from electronic annotation. Source: Compara response to hypoxia Inferred from electronic annotation. Source: Compara wound healing Inferred from electronic annotation. Source: Compara
Cellular_component	integral to membrane Inferred from electronic annotation. Source: UniProtKB-KW neuronal cell body Inferred from electronic annotation. Source: Compara
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	B4DT61 [UniParc]. Last modified September 23, 2008. Version 1. Checksum: 48C25C2E2DD3A5FA	FASTA	81	9,122
	10 20 30 40 50 60 MDPAEEDTNV YTEKHSDSLF KRTEVLAAVI AGGVIGFLFA IFLILLLVYR MRKKDEGSYD 70 80 LGERKPSSAA YQKAPTKEFY A

References

[1]

"NEDO human cDNA sequencing project focused on splicing variants." Wakamatsu A., Yamamoto J., Kimura K., Ishii S., Watanabe K., Sugiyama A., Murakawa K., Kaida T., Tsuchiya K., Fukuzumi Y., Kumagai A., Oishi Y., Yamamoto S., Ono Y., Komori Y., Yamazaki M., Kisu Y., Nishikawa T. , Sugano S., Nomura N., Isogai T. Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE. Tissue: Pericardium EMBL BAG61873.1.

+

Additional computationally mapped references.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AK300067 mRNA. Translation: BAG61873.1.
IPI	IPI00976274.
UniGene	Hs.1501. Hs.598247.
3D structure databases
ModBase	Search...
Protein-protein interaction databases
STRING	B4DT61.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Phylogenomic databases
HOGENOM	HOG000263414.
HOVERGEN	HBG004501.
Gene expression databases
ArrayExpress	B4DT61.
Bgee	B4DT61.
Family and domain databases
InterPro	IPR003585. Neurexin-like. IPR001050. Syndecan. [Graphical view]
PANTHER	PTHR10915. PTHR10915. 1 hit.
Pfam	PF01034. Syndecan. 1 hit. [Graphical view]
SMART	SM00294. 4.1m. 1 hit. [Graphical view]
PROSITE	PS00964. SYNDECAN. 1 hit. [Graphical view]
ProtoNet	Search...
Other
NextBio	35474845.

Entry information

Entry name

B4DT61_HUMAN

Accession

Primary (citable) accession number: B4DT61

Entry history

Integrated into UniProtKB/TrEMBL:	September 23, 2008
Last sequence update:	September 23, 2008
Last modified:	April 3, 2013
This is version 24 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)

Disclaimer

Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.