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Protein
Submitted name:

cDNA FLJ60143, highly similar to Homo sapiens dystrophin, transcript variant Dp140bc, mRNA

Gene
N/A
Organism
Homo sapiens (Human)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
cDNA FLJ60143, highly similar to Homo sapiens dystrophin, transcript variant Dp140bc, mRNAImported
OrganismiHomo sapiens (Human)Imported
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo

PTM / Processingi

Proteomic databases

PRIDEiB4DSV7.

Expressioni

Gene expression databases

BgeeiB4DSV7.
ExpressionAtlasiB4DSV7. baseline and differential.

Interactioni

Protein-protein interaction databases

STRINGi9606.ENSP00000354923.

Structurei

3D structure databases

ProteinModelPortaliB4DSV7.
SMRiB4DSV7. Positions 6-294.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000231175.
HOVERGENiHBG053790.

Family and domain databases

Gene3Di1.10.238.10. 2 hits.
InterProiIPR011992. EF-hand-dom_pair.
IPR015153. EF-hand_dom_typ1.
IPR015154. EF-hand_dom_typ2.
IPR000433. Znf_ZZ.
[Graphical view]
PfamiPF09068. EF-hand_2. 1 hit.
PF09069. EF-hand_3. 1 hit.
PF00569. ZZ. 1 hit.
[Graphical view]
SMARTiSM00291. ZnF_ZZ. 1 hit.
[Graphical view]
PROSITEiPS01357. ZF_ZZ_1. 1 hit.
PS50135. ZF_ZZ_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

B4DSV7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MREQLKGHET QTTCWDHPKM TELYQSLADL NNVRFSAYRT AMKLRRLQKA
60 70 80 90 100
LCLDLLSLSA ACDALDQHNL KQNDQPMDIL QIINCLTTIY DRLEQEHNNL
110 120 130 140 150
VNVPLCVDMC LNWLLNVYDT GRTGRIRVLS FKTGIISLCK AHLEDKYRYL
160 170 180 190 200
FKQVASSTGF CDQRRLGLLL HDSIQIPRQL GEVASFGGSN IEPSVRSCFQ
210 220 230 240 250
FANNKPEIEA ALFLDWMRLE PQSMVWLPVL HRVAAAETAK HQAKCNICKE
260 270 280 290 300
CPIIGFRYRS LKHFNYDICQ SCFFSGRVAK GHKMHYPMVE YCTPTTSGED
310 320 330 340 350
VRDFAKVLKN KFRTKRYFAK HPRMGYLPVQ TVLEGDNMET NLQAEYDRLK
360 370 380 390 400
QQHEHKGLSP LPSPPEMMPT SPQSPRDAEL IAEAKLLRQH KGRLEARMQI
410 420 430 440 450
LEDHNKQLES QLHRLRQLLE QPQAEAKVNG TTVSSPSTSL QRSDSSQPML
460 470 480 490 500
LRVVGSQTSD SMGEEDLLSP PQDTSTGLEE VMEQLNNSFP SSRGHNVGSL
510 520
FHMADDLGRA MESLVSVMTD EEGAE
Length:525
Mass (Da):59,769
Last modified:September 23, 2008 - v1
Checksum:iD597517BCE4D9FD1
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK299936 mRNA. Translation: BAG61769.1.
UniGeneiHs.495912.

Genome annotation databases

UCSCiuc010ngm.3. human.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK299936 mRNA. Translation: BAG61769.1.
UniGeneiHs.495912.

3D structure databases

ProteinModelPortaliB4DSV7.
SMRiB4DSV7. Positions 6-294.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi9606.ENSP00000354923.

Proteomic databases

PRIDEiB4DSV7.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

UCSCiuc010ngm.3. human.

Phylogenomic databases

HOGENOMiHOG000231175.
HOVERGENiHBG053790.

Miscellaneous databases

NextBioi35474768.

Gene expression databases

BgeeiB4DSV7.
ExpressionAtlasiB4DSV7. baseline and differential.

Family and domain databases

Gene3Di1.10.238.10. 2 hits.
InterProiIPR011992. EF-hand-dom_pair.
IPR015153. EF-hand_dom_typ1.
IPR015154. EF-hand_dom_typ2.
IPR000433. Znf_ZZ.
[Graphical view]
PfamiPF09068. EF-hand_2. 1 hit.
PF09069. EF-hand_3. 1 hit.
PF00569. ZZ. 1 hit.
[Graphical view]
SMARTiSM00291. ZnF_ZZ. 1 hit.
[Graphical view]
PROSITEiPS01357. ZF_ZZ_1. 1 hit.
PS50135. ZF_ZZ_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "NEDO human cDNA sequencing project focused on splicing variants."
    Wakamatsu A., Yamamoto J., Kimura K., Ishii S., Watanabe K., Sugiyama A., Murakawa K., Kaida T., Tsuchiya K., Fukuzumi Y., Kumagai A., Oishi Y., Yamamoto S., Ono Y., Komori Y., Yamazaki M., Kisu Y., Nishikawa T.
    , Sugano S., Nomura N., Isogai T.
    Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Tissue: BrainImported.

Entry informationi

Entry nameiB4DSV7_HUMAN
AccessioniPrimary (citable) accession number: B4DSV7
Entry historyi
Integrated into UniProtKB/TrEMBL: September 23, 2008
Last sequence update: September 23, 2008
Last modified: June 24, 2015
This is version 43 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.