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B4DSB9

- B4DSB9_HUMAN

UniProt

B4DSB9 - B4DSB9_HUMAN

Protein
Submitted name:

cDNA FLJ51069, highly similar to DNA mismatch repair protein Msh2

Gene
N/A
Organism
Homo sapiens (Human)
Status
Unreviewed - Annotation score: 1 out of 5- Experimental evidence at transcript leveli
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    • History
      Entry version 37 (01 Oct 2014)
      Sequence version 1 (23 Sep 2008)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. mismatched DNA binding Source: InterPro

    GO - Biological processi

    1. mismatch repair Source: InterPro

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    cDNA FLJ51069, highly similar to DNA mismatch repair protein Msh2Imported
    OrganismiHomo sapiens (Human)Imported
    Taxonomic identifieri9606 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo

    PTM / Processingi

    Proteomic databases

    PRIDEiB4DSB9.

    Structurei

    3D structure databases

    ProteinModelPortaliB4DSB9.
    SMRiB4DSB9. Positions 43-716.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the DNA mismatch repair MutS family.UniRule annotation

    Phylogenomic databases

    HOGENOMiHOG000196498.
    HOVERGENiHBG006399.

    Family and domain databases

    Gene3Di3.40.50.300. 1 hit.
    InterProiIPR000432. DNA_mismatch_repair_MutS_C.
    IPR007861. DNA_mismatch_repair_MutS_clamp.
    IPR007696. DNA_mismatch_repair_MutS_core.
    IPR027417. P-loop_NTPase.
    [Graphical view]
    PfamiPF05192. MutS_III. 1 hit.
    PF05190. MutS_IV. 1 hit.
    PF00488. MutS_V. 1 hit.
    [Graphical view]
    SMARTiSM00534. MUTSac. 1 hit.
    SM00533. MUTSd. 1 hit.
    [Graphical view]
    SUPFAMiSSF48334. SSF48334. 1 hit.
    SSF52540. SSF52540. 1 hit.
    PROSITEiPS00486. DNA_MISMATCH_REPAIR_2. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    B4DSB9-1 [UniParc]FASTAAdd to Basket

    « Hide

    MIGIWHIRLL LAISLSLKTF SLVTMICQLP LVLWVLKCPQ LMARDMGKLR    50
    QIIQRGGILI TERKKADFST KDIYQDLNRL LKGKKGEQMN SAVLPEMENQ 100
    GSVEDTTGSQ SLAALLNKCK TPQGQRLVNQ WIKQPLMDKN RIEERLNLVE 150
    AFVEDAELRQ TLQEDLLRRF PDLNRLAKKF QRQAANLQDC YRLYQGINQL 200
    PNVIQALEKH EGKHQKLLLA VFVTPLTDLR SDFSKFQEMI ETTLDMDQVE 250
    NHEFLVKPSF DPNLSELREI MNDLEKKMQS TLISAARDLG LDPGKQIKLD 300
    SSAQFGYYFR VTCKEEKVLR NNKNFSTVDI QKNGVKFTNS KLTSLNEEYT 350
    KNKTEYEEAQ DAIVKEIVNI SSGYVEPMQT LNDVLAQLDA VVSFAHVSNG 400
    APVPYVRPAI LEKGQGRIIL KASRHACVEV QDEIAFIPND VYFEKDKQMF 450
    HIITGPNMGG KSTYIRQTGV IVLMAQIGCF VPCESAEVSI VDCILARVGA 500
    GDSQLKGVST FMAEMLETAS ILRSATKDSL IIIDELGRGT STYDGFGLAW 550
    AISEYIATKI GAFCMFATHF HELTALANQI PTVNNLHVTA LTTEETLTML 600
    YQVKKGVCDQ SFGIHVAELA NFPKHVIECA KQKALELEEF QYIGESQGYD 650
    IMEPAAKKCY LEREQGEKII QEFLSKVKQM PFTEMSEENI TIKLKQLKAE 700
    VIAKNNSFVN EIISRIKVTT 720
    Length:720
    Mass (Da):81,335
    Last modified:September 23, 2008 - v1
    Checksum:i9354D1F3F157B864
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AK299667 mRNA. Translation: BAG61581.1.
    UniGeneiHs.597656.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AK299667 mRNA. Translation: BAG61581.1 .
    UniGenei Hs.597656.

    3D structure databases

    ProteinModelPortali B4DSB9.
    SMRi B4DSB9. Positions 43-716.
    ModBasei Search...
    MobiDBi Search...

    Proteomic databases

    PRIDEi B4DSB9.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Phylogenomic databases

    HOGENOMi HOG000196498.
    HOVERGENi HBG006399.

    Miscellaneous databases

    NextBioi 35474619.

    Family and domain databases

    Gene3Di 3.40.50.300. 1 hit.
    InterProi IPR000432. DNA_mismatch_repair_MutS_C.
    IPR007861. DNA_mismatch_repair_MutS_clamp.
    IPR007696. DNA_mismatch_repair_MutS_core.
    IPR027417. P-loop_NTPase.
    [Graphical view ]
    Pfami PF05192. MutS_III. 1 hit.
    PF05190. MutS_IV. 1 hit.
    PF00488. MutS_V. 1 hit.
    [Graphical view ]
    SMARTi SM00534. MUTSac. 1 hit.
    SM00533. MUTSd. 1 hit.
    [Graphical view ]
    SUPFAMi SSF48334. SSF48334. 1 hit.
    SSF52540. SSF52540. 1 hit.
    PROSITEi PS00486. DNA_MISMATCH_REPAIR_2. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "NEDO human cDNA sequencing project focused on splicing variants."
      Wakamatsu A., Yamamoto J., Kimura K., Ishii S., Watanabe K., Sugiyama A., Murakawa K., Kaida T., Tsuchiya K., Fukuzumi Y., Kumagai A., Oishi Y., Yamamoto S., Ono Y., Komori Y., Yamazaki M., Kisu Y., Nishikawa T.
      , Sugano S., Nomura N., Isogai T.
      Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE.
      Tissue: BrainImported.

    Entry informationi

    Entry nameiB4DSB9_HUMAN
    AccessioniPrimary (citable) accession number: B4DSB9
    Secondary accession number(s): E9PCH9
    Entry historyi
    Integrated into UniProtKB/TrEMBL: September 23, 2008
    Last sequence update: September 23, 2008
    Last modified: October 1, 2014
    This is version 37 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)
    DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.